COGANT/run_all.json at main · ActiveInferenceInstitute/COGANT · GitHub

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{
  "$comment": "Batch-analysis config for run_all.sh / run_all.py. Outputs land in cogant/output/<id>/. Extend the 'targets' list to add more codebases; add entries to 'extra_remote_targets_example' by moving them up.",
  "package_root": "cogant",
  "output_root": "cogant/output",
  "remote": {
    "shallow_clone": true,
    "refresh": false
  },
  "steps": {
    "doctor": false,
    "translate": true,
    "layout_output": true,
    "no_dynamic": true,
    "scan_json": true,
    "graph_stdout": true,
    "export_gnn": true,
    "export_gnn_format": "all",
    "render_site": true,
    "viz_png": true,
    "validate_run_dir": true,
    "validate_no_upstream_gnn": false,
    "roundtrip": true,
    "_py_api_comment": "analyze_graph / analyze_static / export_multi / visualize_diagrams bypass the auxiliary CLI wrappers and invoke the Python APIs via tools/batch_api.py, so real artifacts land under analysis/, exports/, and diagrams/.",
    "analyze_graph": true,
    "analyze_static": true,
    "export_multi": true,
    "export_multi_formats": "json,jsonlines",
    "visualize_diagrams": true,
    "visualize_format": "mermaid",
    "batch_dashboard": true
  },
  "manuscript": {
    "enabled": false,
    "regenerate_metrics": false,
    "strict": false
  },
  "targets": [
    { "id": "calculator",       "path": "examples/control_positive/calculator" },
    { "id": "event_pipeline",   "path": "examples/control_positive/event_pipeline" },
    { "id": "flask_mini",       "path": "examples/control_positive/flask_mini" },

    { "id": "flask_app",        "path": "examples/real_world/flask_app" },
    { "id": "json_stdlib",      "path": "examples/real_world/json_stdlib" },
    { "id": "requests_lib",     "path": "examples/real_world/requests_lib" },

    { "id": "zoo_01_simple_state",  "path": "examples/zoo/01_simple_state" },
    { "id": "zoo_02_observer",      "path": "examples/zoo/02_observer" },
    { "id": "zoo_03_actor",         "path": "examples/zoo/03_actor" },
    { "id": "zoo_04_pomdp_minimal", "path": "examples/zoo/04_pomdp_minimal" },
    { "id": "zoo_05_multi_factor",  "path": "examples/zoo/05_multi_factor" },
    { "id": "zoo_06_hierarchical",  "path": "examples/zoo/06_hierarchical" },
    { "id": "zoo_07_event_driven",  "path": "examples/zoo/07_event_driven" },
    { "id": "zoo_08_preferences",   "path": "examples/zoo/08_preferences" },
    { "id": "zoo_09_policy",        "path": "examples/zoo/09_policy" },
    { "id": "zoo_10_constraint",    "path": "examples/zoo/10_constraint" },
    { "id": "zoo_11_sensor_fusion", "path": "examples/zoo/11_sensor_fusion" },
    { "id": "zoo_12_full_pomdp",    "path": "examples/zoo/12_full_pomdp" },
    {
      "id": "zoo_13_js_observer",
      "path": "examples/zoo/13_js_observer",
      "roundtrip_threshold": 0.0,
      "roundtrip_note": "Degenerate JS fixture: source role multiset is empty in the Python parser-backed roundtrip scorer."
    },

    { "id": "python_service",   "path": "examples/python-service" },
    { "id": "workflow_engine",  "path": "examples/workflow-engine" },

    { "id": "remote_itsdangerous", "path": null, "git_url": "https://github.com/pallets/itsdangerous.git", "git_ref": "2.2.0" },
    { "id": "remote_markupsafe",   "path": null, "git_url": "https://github.com/pallets/markupsafe.git",   "git_ref": "2.1.5" },
    { "id": "remote_click",        "path": null, "git_url": "https://github.com/pallets/click.git",        "git_ref": "8.1.7" }
  ],
  "$comment_extra": "Pin every remote target to an immutable release tag via git_ref so shallow clones are reproducible (TODO 3/7); a null git_ref clones a moving default branch.",
  "extra_remote_targets_example": [
    { "id": "remote_pyyaml",    "path": null, "git_url": "https://github.com/yaml/pyyaml.git",         "git_ref": "6.0.2"  },
    { "id": "remote_requests",  "path": null, "git_url": "https://github.com/psf/requests.git",        "git_ref": "v2.32.3" },
    { "id": "remote_tqdm",      "path": null, "git_url": "https://github.com/tqdm/tqdm.git",           "git_ref": "v4.66.5" },
    { "id": "remote_dateutil",  "path": null, "git_url": "https://github.com/dateutil/dateutil.git",   "git_ref": "2.9.0.post0" },
    { "id": "remote_urllib3",   "path": null, "git_url": "https://github.com/urllib3/urllib3.git",     "git_ref": "2.2.3"  },
    { "id": "remote_httpx",     "path": null, "git_url": "https://github.com/encode/httpx.git",        "git_ref": "0.27.2" },
    { "id": "remote_fastapi",   "path": null, "git_url": "https://github.com/tiangolo/fastapi.git",    "git_ref": "0.115.0" }
  ]
}