diff --git a/cg/meta/workflow/nf_analysis.py b/cg/meta/workflow/nf_analysis.py index 84c69c5ad89..169a8978ecf 100644 --- a/cg/meta/workflow/nf_analysis.py +++ b/cg/meta/workflow/nf_analysis.py @@ -57,7 +57,6 @@ def __init__(self, config: CGConfig, workflow: Workflow): super().__init__(workflow=workflow, config=config) self.workflow: Workflow = workflow self.root_dir: str | None = None - self.workflow_bin_path: str | None = None self.references: str | None = None self.profile: str | None = None self.conda_env: str | None = None diff --git a/cg/meta/workflow/taxprofiler.py b/cg/meta/workflow/taxprofiler.py index 6833f0371e2..0cd28a9146e 100644 --- a/cg/meta/workflow/taxprofiler.py +++ b/cg/meta/workflow/taxprofiler.py @@ -33,7 +33,6 @@ def __init__( ): super().__init__(config=config, workflow=workflow) self.root_dir: str = config.taxprofiler.root - self.workflow_bin_path: str = config.taxprofiler.workflow_bin_path self.profile: str = config.taxprofiler.profile self.conda_env: str = config.taxprofiler.conda_env self.conda_binary: str = config.taxprofiler.conda_binary diff --git a/cg/models/cg_config.py b/cg/models/cg_config.py index 3272d2cfe3f..1ea044c94a7 100644 --- a/cg/models/cg_config.py +++ b/cg/models/cg_config.py @@ -314,7 +314,6 @@ class TaxprofilerConfig(CommonAppConfig): params: str config: str resources: str - workflow_bin_path: str pre_run_script: str = "" profile: str repository: str diff --git a/tests/conftest.py b/tests/conftest.py index 3358f254cea..6c7a1b75fda 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -2246,7 +2246,6 @@ def context_config( "config": str(nf_analysis_pipeline_config_path), "resources": str(nf_analysis_pipeline_resource_optimisation_path), "launch_directory": Path("path", "to", "launchdir").as_posix(), - "workflow_bin_path": Path("workflow", "path").as_posix(), "pre_run_script": "", "profile": "myprofile", "repository": "https://some_url", diff --git a/tests/fixture_plugins/analysis_starter/pipeline_config_fixtures.py b/tests/fixture_plugins/analysis_starter/pipeline_config_fixtures.py index c940d4500ae..37420b3fc89 100644 --- a/tests/fixture_plugins/analysis_starter/pipeline_config_fixtures.py +++ b/tests/fixture_plugins/analysis_starter/pipeline_config_fixtures.py @@ -48,7 +48,6 @@ def _make_dict(workflow: str) -> dict: "config": str(nf_analysis_pipeline_config_path), "resources": str(nf_analysis_pipeline_resource_optimisation_path), "launch_directory": Path("path", "to", "launchdir").as_posix(), - "workflow_bin_path": Path("workflow", "path").as_posix(), "profile": "myprofile", "references": Path("path", "to", "references").as_posix(), "repository": nextflow_repository,