diff --git a/README.md b/README.md index 63b9937..9f7c375 100644 --- a/README.md +++ b/README.md @@ -227,7 +227,7 @@ params.freyja = true # multiple SARS-CoV-2 lineage determin params.vadr = false # NCBI fasta QC params.relatedness = false # create multiple sequence alignments with input fastq and fasta files params.snpdists = true # creates snp matrix from mafft multiple sequence alignment -params.iqtree = true # creates phylogenetic tree from mafft multiple sequence alignement +params.iqtree = true # creates phylogenetic tree from mafft multiple sequence alignment params.bamsnap = false # has been removed params.rename = false # needs a corresponding sample file and will rename files for GISAID and NCBI submission params.filter = false # takes the aligned reads and turns them back into fastq.gz files