diff --git a/.dev/Readme.md b/.dev/Readme.md index 0056428..0a0324e 100644 --- a/.dev/Readme.md +++ b/.dev/Readme.md @@ -1,13 +1,15 @@ -## Install dev venv -`uv sync --extra dev --extra notebook` - -## Bumping version -Edit the `fundus_image_toolbox/_version.py`` - -## Running Tests - -This repository uses `unittest` for tests and `tox` for venv-sandboxed testing. - +## Auto-testing +As of August 2026, dependabot runs monthly and tox tests are applied to PRs. + +## Before PRs into main +- On `dev` branch, install venv: `uv sync --extra dev --extra notebook` +- Run `uv lock --upgrade` to use latest compatible package versions. +- Bump FIT version: Edit the `fundus_image_toolbox/_version.py` +- Run tests on multiple OS: This repository uses `unittest` for tests and `tox` for venv-sandboxed testing. See below how to run. +- Update compatibility table in `README.md`. +- Merge into `main`. + +## Testing ### Tox - Run default unittests via tox in isolated Python venvs: - `uv run tox` @@ -37,3 +39,5 @@ This repository uses `unittest` for tests and `tox` for venv-sandboxed testing. ## Syntax check: `uv run python -m compileall fundus_image_toolbox` +## New optional dependencies? +If we add deps to extra groups, `.github/dependabot.yml` should be updated accordingly to handle them as what they are: optional extras. \ No newline at end of file diff --git a/.github/dependabot.yml b/.github/dependabot.yml new file mode 100644 index 0000000..53090b7 --- /dev/null +++ b/.github/dependabot.yml @@ -0,0 +1,45 @@ +version: 2 + +updates: + - package-ecosystem: "uv" + directory: "/" + schedule: + interval: "monthly" + open-pull-requests-limit: 5 + reviewers: + - "juliusge" + groups: + # Mirrors the repo's Dependabot auto-triage rules (scope:development, + # package:ipykernel/ipython/jupyter/jupyter-black/notebook-shim): + # bundle the same low-priority extras into one PR instead of one each. + dev-and-notebook-tooling: + patterns: + - "pip" + - "tox" + - "tox-uv" + - "mypy" + - "ipykernel" + - "ipython" + - "jupyter" + - "jupyter-black" + - "notebook-shim" + runtime-dependencies: + patterns: + - "*" + exclude-patterns: + - "pip" + - "tox" + - "tox-uv" + - "mypy" + - "ipykernel" + - "ipython" + - "jupyter" + - "jupyter-black" + - "notebook-shim" + + - package-ecosystem: "github-actions" + directory: "/" + schedule: + interval: "monthly" + reviewers: + - "juliusge" diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml new file mode 100644 index 0000000..637050c --- /dev/null +++ b/.github/workflows/tests.yml @@ -0,0 +1,40 @@ +name: Tests + +on: + pull_request: + branches: [main] + +jobs: + test: + runs-on: ${{ matrix.os }} + timeout-minutes: 45 + continue-on-error: ${{ matrix.os == 'windows-latest' }} + env: + MPLBACKEND: Agg + strategy: + fail-fast: false + matrix: + os: [ubuntu-latest, macos-latest, windows-latest] + + steps: + - uses: actions/checkout@v4 + + - uses: astral-sh/setup-uv@v10.0.0 + + - name: Set weights cache directory + shell: bash + run: echo "FIT_CACHE_DIR=${{ runner.temp }}/fit-weights-cache" >> "$GITHUB_ENV" + + - name: Cache downloaded model weights + uses: actions/cache@v4 + with: + path: ${{ env.FIT_CACHE_DIR }} + key: fit-weights-${{ matrix.os }}-${{ hashFiles('uv.lock') }} + restore-keys: | + fit-weights-${{ matrix.os }}- + + - name: Sync dev environment + run: uv sync --extra dev --python 3.12 + + - name: Run tests via tox (py39-py312; tox-uv provisions interpreters via uv) + run: uv run tox diff --git a/tox.ini b/tox.ini index 2401e9f..f9ee21d 100644 --- a/tox.ini +++ b/tox.ini @@ -1,6 +1,7 @@ [tox] -envlist = py39, py310, py311, py312 +envlist = py39, py310, py311, py312, py313 [testenv] -deps = +deps = +passenv = FIT_*, MPLBACKEND commands = python -m unittest discover -s 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