From cb670da797d26420afea1be7f06ba364350be64a Mon Sep 17 00:00:00 2001 From: Jake Bradford Date: Mon, 20 Feb 2023 14:32:53 +1000 Subject: [PATCH] fixed issue #12 as according to suggested code --- src/crackling/Crackling.py | 9 ++++----- 1 file changed, 4 insertions(+), 5 deletions(-) diff --git a/src/crackling/Crackling.py b/src/crackling/Crackling.py index 3cdd376..22f4fbe 100644 --- a/src/crackling/Crackling.py +++ b/src/crackling/Crackling.py @@ -423,17 +423,16 @@ def processSequence(sequence): printer(f'\t\t{guidesInPage:,} guides in this page.') - runner('{} --noPS -j{} -i {} -o'.format( + runner('{} --noPS -j{} -i {} -o {}'.format( configMngr['rnafold']['binary'], configMngr['rnafold']['threads'], - configMngr['rnafold']['input'] + configMngr['rnafold']['input'], + configMngr['rnafold']['output'] ), shell=True, check=True ) - - os.replace('RNAfold_output.fold' ,configMngr['rnafold']['output']) - + printer('\t\tStarting to process the RNAfold results.') RNAstructures = {}