diff --git a/pkgs/jnigen/CHANGELOG.md b/pkgs/jnigen/CHANGELOG.md
index d19fc083a6..115b09cb6a 100644
--- a/pkgs/jnigen/CHANGELOG.md
+++ b/pkgs/jnigen/CHANGELOG.md
@@ -17,6 +17,8 @@
   elements.dart is no longer exported from the library, as these classes were
   always intended to be private. `Config.importedClasses` and
   `Config.importClasses()` have also been made private.
+- Preserve Java `@deprecated` Javadoc messages in generated Dart
+  `@Deprecated` annotations.
 
 ## 0.16.0
 
diff --git a/pkgs/jnigen/lib/src/bindings/dart_generator.dart b/pkgs/jnigen/lib/src/bindings/dart_generator.dart
index 49ad70611d..869813a568 100644
--- a/pkgs/jnigen/lib/src/bindings/dart_generator.dart
+++ b/pkgs/jnigen/lib/src/bindings/dart_generator.dart
@@ -1312,7 +1312,9 @@ ${modifier}final _$idName = $_protectedExtension
     }
     final params = defArgs.delimited(', ');
     if (node.isDeprecated) {
-      s.writeln("  @core\$_.Deprecated('This Java method is deprecated.')");
+      final message = node.javadoc?.deprecatedMessage ??
+          "'This Java method is deprecated.'";
+      s.writeln('  @core\$_.Deprecated($message)');
     }
     if (node.methodKind == MethodKind.getter) {
       s.write('  $ifStatic$returnType get $name ');
diff --git a/pkgs/jnigen/lib/src/elements/elements.dart b/pkgs/jnigen/lib/src/elements/elements.dart
index 443db2002d..1524f8f517 100644
--- a/pkgs/jnigen/lib/src/elements/elements.dart
+++ b/pkgs/jnigen/lib/src/elements/elements.dart
@@ -2,6 +2,8 @@
 // for details. All rights reserved. Use of this source code is governed by a
 // BSD-style license that can be found in the LICENSE file.
 
+import 'dart:convert';
+
 import 'package:json_annotation/json_annotation.dart';
 import 'package:meta/meta.dart';
 
@@ -973,6 +975,48 @@ class JavaDocComment implements Element<JavaDocComment> {
 
   final String comment;
 
+  String? get deprecatedMessage {
+    final lines = comment.split('\n');
+    final messageLines = <String>[];
+    var readingDeprecatedTag = false;
+
+    for (final line in lines) {
+      final trimmed = line.trim();
+
+      if (!readingDeprecatedTag) {
+        if (trimmed.startsWith('@deprecated')) {
+          readingDeprecatedTag = true;
+
+          final firstLine = trimmed.substring('@deprecated'.length).trim();
+          if (firstLine.isNotEmpty) {
+            messageLines.add(firstLine);
+          }
+        }
+        continue;
+      }
+
+      // A new Javadoc block tag marks the end of the deprecated message.
+      if (trimmed.startsWith('@')) {
+        break;
+      }
+
+      if (trimmed.isNotEmpty) {
+        messageLines.add(trimmed);
+      }
+    }
+
+    final message = messageLines.join('\n').trim();
+    if (message.isEmpty) return null;
+
+    final encoded = jsonEncode(message);
+    final contents = encoded
+        .substring(1, encoded.length - 1)
+        .replaceAll("'", r"\'")
+        .replaceAll(r'$', r'\$');
+
+    return "'$contents'";
+  }
+
   factory JavaDocComment.fromJson(Map<String, dynamic> json) =>
       _$JavaDocCommentFromJson(json);
 
diff --git a/pkgs/jnigen/test/deprecated_message_test.dart b/pkgs/jnigen/test/deprecated_message_test.dart
new file mode 100644
index 0000000000..02e3476a16
--- /dev/null
+++ b/pkgs/jnigen/test/deprecated_message_test.dart
@@ -0,0 +1,114 @@
+// Copyright (c) 2026, the Dart project authors. Please see the AUTHORS file
+// for details. All rights reserved. Use of this source code is governed by a
+// BSD-style license that can be found in the LICENSE file.
+
+import 'package:jnigen/src/elements/elements.dart';
+import 'package:test/test.dart';
+
+void main() {
+  group('JavaDocComment.deprecatedMessage', () {
+    test('extracts a single-line message', () {
+      final comment = JavaDocComment(
+        comment: '@deprecated Use the replacement method instead.',
+      );
+
+      expect(
+        comment.deprecatedMessage,
+        "'Use the replacement method instead.'",
+      );
+    });
+
+    test('allows description text before the tag', () {
+      final comment = JavaDocComment(
+        comment: '''
+This method is retained for compatibility.
+
+@deprecated Use the replacement method instead.
+''',
+      );
+
+      expect(
+        comment.deprecatedMessage,
+        "'Use the replacement method instead.'",
+      );
+    });
+
+    test('extracts a multiline message', () {
+      final comment = JavaDocComment(
+        comment: '''
+@deprecated Use the replacement method instead.
+This method will be removed in a future release.
+''',
+      );
+
+      expect(
+        comment.deprecatedMessage,
+        r"'Use the replacement method instead.\nThis method will be removed in a future release.'",
+      );
+    });
+
+    test('stops at the next block tag', () {
+      final comment = JavaDocComment(
+        comment: '''
+@deprecated Use the replacement method instead.
+This method will be removed soon.
+@return the old result
+''',
+      );
+
+      expect(
+        comment.deprecatedMessage,
+        r"'Use the replacement method instead.\nThis method will be removed soon.'",
+      );
+    });
+
+    test('returns null when the tag is absent', () {
+      final comment = JavaDocComment(
+        comment: 'This is a regular Javadoc comment.',
+      );
+
+      expect(comment.deprecatedMessage, isNull);
+    });
+
+    test('returns null when the message is empty', () {
+      final comment = JavaDocComment(
+        comment: '@deprecated',
+      );
+
+      expect(comment.deprecatedMessage, isNull);
+    });
+
+    test('escapes apostrophes and dollar signs', () {
+      final comment = JavaDocComment(
+        comment: r"@deprecated Don't use $oldMethod.",
+      );
+
+      expect(
+        comment.deprecatedMessage,
+        r"'Don\'t use \$oldMethod.'",
+      );
+    });
+
+    test('escapes backslashes', () {
+      final comment = JavaDocComment(
+        comment: r'@deprecated Use C:\temp instead.',
+      );
+
+      expect(
+        comment.deprecatedMessage,
+        r"'Use C:\\temp instead.'",
+      );
+    });
+
+    test('escapes double quotes', () {
+      final comment = JavaDocComment(
+        comment: '@deprecated Use "newMethod" instead.',
+      );
+
+      expect(
+        comment.deprecatedMessage,
+        "'Use \\\"newMethod\\\" instead.'",
+      );
+    });
+  });
+}
diff --git a/pkgs/jnigen/test/simple_package_test/java/com/github/dart_lang/jnigen/simple_package/Example.java b/pkgs/jnigen/test/simple_package_test/java/com/github/dart_lang/jnigen/simple_package/Example.java
index 18ff339ff8..e8278aa15a 100644
--- a/pkgs/jnigen/test/simple_package_test/java/com/github/dart_lang/jnigen/simple_package/Example.java
+++ b/pkgs/jnigen/test/simple_package_test/java/com/github/dart_lang/jnigen/simple_package/Example.java
@@ -147,6 +147,11 @@ public String joinStrings(List<String> values, String delim) {
     return null;
   }
 
+  /**
+   * This method is retained for compatibility.
+   *
+   * @deprecated Use methodWithSeveralParams instead.
+   */
   @Deprecated
   public String deprecatedMethod() {
     return "deprecated";