DESCRIPTION

Package: CellDiff
Type: Package
Title: Differential Analysis of Cell-Cell Communication
Version: 0.2.0
Date: 2025-01-25
Authors@R: person("Kai", "Guo", email = "guokai8@gmail.com", role = c("aut", "cre"))
Description: CellDiff provides enhanced visualizations and statistical analysis 
    for differential cell-cell communication between experimental groups. Building 
    upon CellChat outputs, this package focuses on comparative analysis with 
    statistical testing and improved visualization methods for identifying biologically 
    meaningful differences in intercellular signaling.
License: GPLv3 LICENSE
Encoding: UTF-8
LazyData: true
Depends:
    R (>= 4.0.0),
    CellChat (>= 1.0.0)
Imports:
    ggplot2 (>= 3.3.0),
    dplyr (>= 1.0.0),
    tidyr (>= 1.1.0),
    reshape2 (>= 1.4.4),
    pheatmap (>= 1.0.12),
    circlize (>= 0.4.12),
    ComplexHeatmap (>= 2.6.2),
    Seurat (>= 4.0.0),
    igraph (>= 1.2.6),
    ggalluvial (>= 0.12.3),
    networkD3 (>= 0.4),
    htmlwidgets (>= 1.5.4),
    UpSetR (>= 1.4.0),
    viridis (>= 0.6.2),
    scales (>= 1.1.1),
    grid (>= 4.0.0),
    methods,
    stats,
    utils,
    grDevices,
    graphics,
    purrr,
    ggrepel,
    stringr
Suggests:
    knitr,
    rmarkdown,
    testthat (>= 3.0.0),
    BiocManager,
    profvis,
    bench,
    usethis
RoxygenNote: 7.3.3
VignetteBuilder: knitr
biocViews:
BugReports: https://github.com/guokai8/CellDiff/issues
URL: https://github.com/guokai8/CellDiff