From c3fadf89fd7a565de8b4bf02179b3a4cb3320435 Mon Sep 17 00:00:00 2001 From: matentzn Date: Sun, 5 Apr 2026 05:33:24 +0000 Subject: [PATCH 1/2] Add cell nucleus label overrides for GO:0005634 terms (#972) https://claude.ai/code/session_01ChK2mm7BcsKrL7Hwjksw4f --- .../abnormalAbsenceOfAnatomicalEntity.tsv | 3348 ++++++++--------- ...ProteinLocalizationInCellularComponent.tsv | 72 +- ...ProteinLocalizationInCellularComponent.tsv | 70 +- .../abnormalMorphologyOfCellularComponent.tsv | 824 ++-- .../abnormalNumberOfAnatomicalEntity.tsv | 786 ++-- ...ProteinLocalizationInCellularComponent.tsv | 68 +- ...rmallyDecreasedSizeOfCellularComponent.tsv | 36 +- ...ProteinLocalizationInCellularComponent.tsv | 66 +- ...allyIncreasedNumberOfCellularComponent.tsv | 42 +- ...rmallyIncreasedSizeOfCellularComponent.tsv | 32 +- .../abnormallyRotatedAnatomicalEntity.tsv | 22 +- 11 files changed, 2683 insertions(+), 2683 deletions(-) diff --git a/src/patterns/data/automatic/abnormalAbsenceOfAnatomicalEntity.tsv b/src/patterns/data/automatic/abnormalAbsenceOfAnatomicalEntity.tsv index 47a6b8de..3003f677 100644 --- a/src/patterns/data/automatic/abnormalAbsenceOfAnatomicalEntity.tsv +++ b/src/patterns/data/automatic/abnormalAbsenceOfAnatomicalEntity.tsv @@ -1,1674 +1,1674 @@ -anatomical_entity defined_class -http://purl.obolibrary.org/obo/UBERON_0004187 http://purl.obolibrary.org/obo/UPHENO_0008414 -http://purl.obolibrary.org/obo/UBERON_0004066 http://purl.obolibrary.org/obo/UPHENO_0008853 -http://purl.obolibrary.org/obo/UBERON_0009879 http://purl.obolibrary.org/obo/UPHENO_0008417 -http://purl.obolibrary.org/obo/CL_0000442 http://purl.obolibrary.org/obo/UPHENO_0086183 -http://purl.obolibrary.org/obo/UBERON_0003092 http://purl.obolibrary.org/obo/UPHENO_0008418 -http://purl.obolibrary.org/obo/UBERON_0008780 http://purl.obolibrary.org/obo/UPHENO_0008419 -http://purl.obolibrary.org/obo/UBERON_0009871 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http://purl.obolibrary.org/obo/UPHENO_0083603 +http://purl.obolibrary.org/obo/GO_0072686 http://purl.obolibrary.org/obo/UPHENO_0083604 +http://purl.obolibrary.org/obo/GO_0062201 http://purl.obolibrary.org/obo/UPHENO_0083605 +http://purl.obolibrary.org/obo/GO_0009986 http://purl.obolibrary.org/obo/UPHENO_0083606 +http://purl.obolibrary.org/obo/GO_0110085 http://purl.obolibrary.org/obo/UPHENO_0090013 +http://purl.obolibrary.org/obo/GO_0044354 http://purl.obolibrary.org/obo/UPHENO_0083607 +http://purl.obolibrary.org/obo/GO_0000331 http://purl.obolibrary.org/obo/UPHENO_0083608 +http://purl.obolibrary.org/obo/GO_0005764 http://purl.obolibrary.org/obo/UPHENO_0083609 +http://purl.obolibrary.org/obo/GO_1990023 http://purl.obolibrary.org/obo/UPHENO_0083610 +http://purl.obolibrary.org/obo/GO_0005765 http://purl.obolibrary.org/obo/UPHENO_0083611 +http://purl.obolibrary.org/obo/GO_0005886 http://purl.obolibrary.org/obo/UPHENO_0083612 +http://purl.obolibrary.org/obo/GO_0044291 http://purl.obolibrary.org/obo/UPHENO_0083613 +http://purl.obolibrary.org/obo/GO_0005815 http://purl.obolibrary.org/obo/UPHENO_0083614 +http://purl.obolibrary.org/obo/GO_0005938 http://purl.obolibrary.org/obo/UPHENO_0083615 +http://purl.obolibrary.org/obo/GO_0031164 http://purl.obolibrary.org/obo/UPHENO_0083616 +http://purl.obolibrary.org/obo/GO_0032154 http://purl.obolibrary.org/obo/UPHENO_0083617 +http://purl.obolibrary.org/obo/GO_0030175 http://purl.obolibrary.org/obo/UPHENO_0083618 +http://purl.obolibrary.org/obo/GO_0031143 http://purl.obolibrary.org/obo/UPHENO_0083619 +http://purl.obolibrary.org/obo/GO_0032195 http://purl.obolibrary.org/obo/UPHENO_0083620 +http://purl.obolibrary.org/obo/GO_0036019 http://purl.obolibrary.org/obo/UPHENO_0083621 +http://purl.obolibrary.org/obo/GO_0071944 http://purl.obolibrary.org/obo/UPHENO_0083622 +http://purl.obolibrary.org/obo/GO_0016323 http://purl.obolibrary.org/obo/UPHENO_0083623 +http://purl.obolibrary.org/obo/GO_0016324 http://purl.obolibrary.org/obo/UPHENO_0083624 +http://purl.obolibrary.org/obo/GO_0045335 http://purl.obolibrary.org/obo/UPHENO_0083625 +http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0083626 +http://purl.obolibrary.org/obo/GO_0005635 http://purl.obolibrary.org/obo/UPHENO_0083627 +http://purl.obolibrary.org/obo/GO_0005813 http://purl.obolibrary.org/obo/UPHENO_0083628 +http://purl.obolibrary.org/obo/GO_0005737 http://purl.obolibrary.org/obo/UPHENO_0083629 +http://purl.obolibrary.org/obo/GO_0005730 http://purl.obolibrary.org/obo/UPHENO_0083630 +http://purl.obolibrary.org/obo/GO_0005874 http://purl.obolibrary.org/obo/UPHENO_0083631 +http://purl.obolibrary.org/obo/GO_0005776 http://purl.obolibrary.org/obo/UPHENO_0083632 +http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0083633 absent protein localization in cell nucleus diff --git a/src/patterns/data/automatic/abnormalEfficacyOfProteinLocalizationInCellularComponent.tsv b/src/patterns/data/automatic/abnormalEfficacyOfProteinLocalizationInCellularComponent.tsv index 09a77a65..50774acf 100644 --- a/src/patterns/data/automatic/abnormalEfficacyOfProteinLocalizationInCellularComponent.tsv +++ b/src/patterns/data/automatic/abnormalEfficacyOfProteinLocalizationInCellularComponent.tsv @@ -1,35 +1,35 @@ -location defined_class -http://purl.obolibrary.org/obo/GO_0031254 http://purl.obolibrary.org/obo/UPHENO_0082958 -http://purl.obolibrary.org/obo/GO_0031410 http://purl.obolibrary.org/obo/UPHENO_0082959 -http://purl.obolibrary.org/obo/GO_0005905 http://purl.obolibrary.org/obo/UPHENO_0082960 -http://purl.obolibrary.org/obo/GO_0031252 http://purl.obolibrary.org/obo/UPHENO_0082961 -http://purl.obolibrary.org/obo/GO_0072686 http://purl.obolibrary.org/obo/UPHENO_0082962 -http://purl.obolibrary.org/obo/GO_0062201 http://purl.obolibrary.org/obo/UPHENO_0082963 -http://purl.obolibrary.org/obo/GO_0009986 http://purl.obolibrary.org/obo/UPHENO_0082964 -http://purl.obolibrary.org/obo/GO_0110085 http://purl.obolibrary.org/obo/UPHENO_0090112 -http://purl.obolibrary.org/obo/GO_0044354 http://purl.obolibrary.org/obo/UPHENO_0082965 -http://purl.obolibrary.org/obo/GO_0005764 http://purl.obolibrary.org/obo/UPHENO_0082966 -http://purl.obolibrary.org/obo/GO_1990023 http://purl.obolibrary.org/obo/UPHENO_0082967 -http://purl.obolibrary.org/obo/GO_0005765 http://purl.obolibrary.org/obo/UPHENO_0082968 -http://purl.obolibrary.org/obo/GO_0005886 http://purl.obolibrary.org/obo/UPHENO_0082969 -http://purl.obolibrary.org/obo/GO_0044291 http://purl.obolibrary.org/obo/UPHENO_0082970 -http://purl.obolibrary.org/obo/GO_0005815 http://purl.obolibrary.org/obo/UPHENO_0082971 -http://purl.obolibrary.org/obo/GO_0005938 http://purl.obolibrary.org/obo/UPHENO_0082972 -http://purl.obolibrary.org/obo/GO_0031164 http://purl.obolibrary.org/obo/UPHENO_0082973 -http://purl.obolibrary.org/obo/GO_0032154 http://purl.obolibrary.org/obo/UPHENO_0082974 -http://purl.obolibrary.org/obo/GO_0030175 http://purl.obolibrary.org/obo/UPHENO_0082975 -http://purl.obolibrary.org/obo/GO_0031143 http://purl.obolibrary.org/obo/UPHENO_0082976 -http://purl.obolibrary.org/obo/GO_0032195 http://purl.obolibrary.org/obo/UPHENO_0082977 -http://purl.obolibrary.org/obo/GO_0036019 http://purl.obolibrary.org/obo/UPHENO_0082978 -http://purl.obolibrary.org/obo/GO_0071944 http://purl.obolibrary.org/obo/UPHENO_0082979 -http://purl.obolibrary.org/obo/GO_0016323 http://purl.obolibrary.org/obo/UPHENO_0082980 -http://purl.obolibrary.org/obo/GO_0016324 http://purl.obolibrary.org/obo/UPHENO_0082981 -http://purl.obolibrary.org/obo/GO_0045335 http://purl.obolibrary.org/obo/UPHENO_0082982 -http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0082983 -http://purl.obolibrary.org/obo/GO_0005635 http://purl.obolibrary.org/obo/UPHENO_0082984 -http://purl.obolibrary.org/obo/GO_0005813 http://purl.obolibrary.org/obo/UPHENO_0082985 -http://purl.obolibrary.org/obo/GO_0005737 http://purl.obolibrary.org/obo/UPHENO_0082986 -http://purl.obolibrary.org/obo/GO_0005730 http://purl.obolibrary.org/obo/UPHENO_0082987 -http://purl.obolibrary.org/obo/GO_0005874 http://purl.obolibrary.org/obo/UPHENO_0082988 -http://purl.obolibrary.org/obo/GO_0005776 http://purl.obolibrary.org/obo/UPHENO_0082989 -http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0082990 +location defined_class defined_class_name +http://purl.obolibrary.org/obo/GO_0031254 http://purl.obolibrary.org/obo/UPHENO_0082958 +http://purl.obolibrary.org/obo/GO_0031410 http://purl.obolibrary.org/obo/UPHENO_0082959 +http://purl.obolibrary.org/obo/GO_0005905 http://purl.obolibrary.org/obo/UPHENO_0082960 +http://purl.obolibrary.org/obo/GO_0031252 http://purl.obolibrary.org/obo/UPHENO_0082961 +http://purl.obolibrary.org/obo/GO_0072686 http://purl.obolibrary.org/obo/UPHENO_0082962 +http://purl.obolibrary.org/obo/GO_0062201 http://purl.obolibrary.org/obo/UPHENO_0082963 +http://purl.obolibrary.org/obo/GO_0009986 http://purl.obolibrary.org/obo/UPHENO_0082964 +http://purl.obolibrary.org/obo/GO_0110085 http://purl.obolibrary.org/obo/UPHENO_0090112 +http://purl.obolibrary.org/obo/GO_0044354 http://purl.obolibrary.org/obo/UPHENO_0082965 +http://purl.obolibrary.org/obo/GO_0005764 http://purl.obolibrary.org/obo/UPHENO_0082966 +http://purl.obolibrary.org/obo/GO_1990023 http://purl.obolibrary.org/obo/UPHENO_0082967 +http://purl.obolibrary.org/obo/GO_0005765 http://purl.obolibrary.org/obo/UPHENO_0082968 +http://purl.obolibrary.org/obo/GO_0005886 http://purl.obolibrary.org/obo/UPHENO_0082969 +http://purl.obolibrary.org/obo/GO_0044291 http://purl.obolibrary.org/obo/UPHENO_0082970 +http://purl.obolibrary.org/obo/GO_0005815 http://purl.obolibrary.org/obo/UPHENO_0082971 +http://purl.obolibrary.org/obo/GO_0005938 http://purl.obolibrary.org/obo/UPHENO_0082972 +http://purl.obolibrary.org/obo/GO_0031164 http://purl.obolibrary.org/obo/UPHENO_0082973 +http://purl.obolibrary.org/obo/GO_0032154 http://purl.obolibrary.org/obo/UPHENO_0082974 +http://purl.obolibrary.org/obo/GO_0030175 http://purl.obolibrary.org/obo/UPHENO_0082975 +http://purl.obolibrary.org/obo/GO_0031143 http://purl.obolibrary.org/obo/UPHENO_0082976 +http://purl.obolibrary.org/obo/GO_0032195 http://purl.obolibrary.org/obo/UPHENO_0082977 +http://purl.obolibrary.org/obo/GO_0036019 http://purl.obolibrary.org/obo/UPHENO_0082978 +http://purl.obolibrary.org/obo/GO_0071944 http://purl.obolibrary.org/obo/UPHENO_0082979 +http://purl.obolibrary.org/obo/GO_0016323 http://purl.obolibrary.org/obo/UPHENO_0082980 +http://purl.obolibrary.org/obo/GO_0016324 http://purl.obolibrary.org/obo/UPHENO_0082981 +http://purl.obolibrary.org/obo/GO_0045335 http://purl.obolibrary.org/obo/UPHENO_0082982 +http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0082983 +http://purl.obolibrary.org/obo/GO_0005635 http://purl.obolibrary.org/obo/UPHENO_0082984 +http://purl.obolibrary.org/obo/GO_0005813 http://purl.obolibrary.org/obo/UPHENO_0082985 +http://purl.obolibrary.org/obo/GO_0005737 http://purl.obolibrary.org/obo/UPHENO_0082986 +http://purl.obolibrary.org/obo/GO_0005730 http://purl.obolibrary.org/obo/UPHENO_0082987 +http://purl.obolibrary.org/obo/GO_0005874 http://purl.obolibrary.org/obo/UPHENO_0082988 +http://purl.obolibrary.org/obo/GO_0005776 http://purl.obolibrary.org/obo/UPHENO_0082989 +http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0082990 abnormal protein localization in cell nucleus diff --git a/src/patterns/data/automatic/abnormalMorphologyOfCellularComponent.tsv b/src/patterns/data/automatic/abnormalMorphologyOfCellularComponent.tsv index e32f1229..b36b51ac 100644 --- a/src/patterns/data/automatic/abnormalMorphologyOfCellularComponent.tsv +++ b/src/patterns/data/automatic/abnormalMorphologyOfCellularComponent.tsv @@ -1,412 +1,412 @@ -cellular_component defined_class -http://purl.obolibrary.org/obo/GO_0043197 http://purl.obolibrary.org/obo/UPHENO_0067636 -http://purl.obolibrary.org/obo/GO_0000262 http://purl.obolibrary.org/obo/UPHENO_0067637 -http://purl.obolibrary.org/obo/GO_0042383 http://purl.obolibrary.org/obo/UPHENO_0067638 -http://purl.obolibrary.org/obo/GO_0016529 http://purl.obolibrary.org/obo/UPHENO_0067639 -http://purl.obolibrary.org/obo/GO_0016607 http://purl.obolibrary.org/obo/UPHENO_0067640 -http://purl.obolibrary.org/obo/GO_0008021 http://purl.obolibrary.org/obo/UPHENO_0067641 -http://purl.obolibrary.org/obo/GO_0005794 http://purl.obolibrary.org/obo/UPHENO_0067642 -http://purl.obolibrary.org/obo/GO_0005795 http://purl.obolibrary.org/obo/UPHENO_0067643 -http://purl.obolibrary.org/obo/GO_0014704 http://purl.obolibrary.org/obo/UPHENO_0067644 -http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0067645 -http://purl.obolibrary.org/obo/GO_0001750 http://purl.obolibrary.org/obo/UPHENO_0067646 -http://purl.obolibrary.org/obo/GO_0060091 http://purl.obolibrary.org/obo/UPHENO_0067647 -http://purl.obolibrary.org/obo/GO_0005759 http://purl.obolibrary.org/obo/UPHENO_0067648 -http://purl.obolibrary.org/obo/GO_0097730 http://purl.obolibrary.org/obo/UPHENO_0067649 -http://purl.obolibrary.org/obo/GO_0043195 http://purl.obolibrary.org/obo/UPHENO_0067650 -http://purl.obolibrary.org/obo/GO_0000781 http://purl.obolibrary.org/obo/UPHENO_0067651 -http://purl.obolibrary.org/obo/GO_0043194 http://purl.obolibrary.org/obo/UPHENO_0067652 -http://purl.obolibrary.org/obo/GO_0036053 http://purl.obolibrary.org/obo/UPHENO_0067653 -http://purl.obolibrary.org/obo/GO_0042827 http://purl.obolibrary.org/obo/UPHENO_0067654 -http://purl.obolibrary.org/obo/GO_0015030 http://purl.obolibrary.org/obo/UPHENO_0067655 -http://purl.obolibrary.org/obo/GO_0030673 http://purl.obolibrary.org/obo/UPHENO_0067656 -http://purl.obolibrary.org/obo/GO_0033269 http://purl.obolibrary.org/obo/UPHENO_0067657 -http://purl.obolibrary.org/obo/GO_0033268 http://purl.obolibrary.org/obo/UPHENO_0067658 -http://purl.obolibrary.org/obo/GO_0061827 http://purl.obolibrary.org/obo/UPHENO_0084414 -http://purl.obolibrary.org/obo/GO_0015630 http://purl.obolibrary.org/obo/UPHENO_0067659 -http://purl.obolibrary.org/obo/GO_0014069 http://purl.obolibrary.org/obo/UPHENO_0067660 -http://purl.obolibrary.org/obo/GO_0016605 http://purl.obolibrary.org/obo/UPHENO_0067661 -http://purl.obolibrary.org/obo/GO_0035686 http://purl.obolibrary.org/obo/UPHENO_0067662 -http://purl.obolibrary.org/obo/GO_0042470 http://purl.obolibrary.org/obo/UPHENO_0067663 -http://purl.obolibrary.org/obo/GO_0043005 http://purl.obolibrary.org/obo/UPHENO_0067664 -http://purl.obolibrary.org/obo/GO_0097381 http://purl.obolibrary.org/obo/UPHENO_0067665 -http://purl.obolibrary.org/obo/GO_0030424 http://purl.obolibrary.org/obo/UPHENO_0067666 -http://purl.obolibrary.org/obo/GO_0002177 http://purl.obolibrary.org/obo/UPHENO_0067667 -http://purl.obolibrary.org/obo/GO_0005886 http://purl.obolibrary.org/obo/UPHENO_0067668 -http://purl.obolibrary.org/obo/GO_0030425 http://purl.obolibrary.org/obo/UPHENO_0067669 -http://purl.obolibrary.org/obo/GO_0031514 http://purl.obolibrary.org/obo/UPHENO_0067670 -http://purl.obolibrary.org/obo/GO_0005840 http://purl.obolibrary.org/obo/UPHENO_0085967 -http://purl.obolibrary.org/obo/GO_0005764 http://purl.obolibrary.org/obo/UPHENO_0067671 -http://purl.obolibrary.org/obo/GO_0001520 http://purl.obolibrary.org/obo/UPHENO_0084415 -http://purl.obolibrary.org/obo/GO_0005604 http://purl.obolibrary.org/obo/UPHENO_0067672 -http://purl.obolibrary.org/obo/GO_0097226 http://purl.obolibrary.org/obo/UPHENO_0067674 -http://purl.obolibrary.org/obo/GO_0031594 http://purl.obolibrary.org/obo/UPHENO_0067675 -http://purl.obolibrary.org/obo/GO_0097225 http://purl.obolibrary.org/obo/UPHENO_0067676 -http://purl.obolibrary.org/obo/GO_0097228 http://purl.obolibrary.org/obo/UPHENO_0067677 -http://purl.obolibrary.org/obo/GO_0097227 http://purl.obolibrary.org/obo/UPHENO_0067678 -http://purl.obolibrary.org/obo/GO_0031674 http://purl.obolibrary.org/obo/UPHENO_0067679 -http://purl.obolibrary.org/obo/GO_0097229 http://purl.obolibrary.org/obo/UPHENO_0067680 -http://purl.obolibrary.org/obo/GO_0031672 http://purl.obolibrary.org/obo/UPHENO_0067681 -http://purl.obolibrary.org/obo/GO_0031430 http://purl.obolibrary.org/obo/UPHENO_0067682 -http://purl.obolibrary.org/obo/GO_0005929 http://purl.obolibrary.org/obo/UPHENO_0067683 -http://purl.obolibrary.org/obo/GO_0031673 http://purl.obolibrary.org/obo/UPHENO_0067684 -http://purl.obolibrary.org/obo/GO_0043209 http://purl.obolibrary.org/obo/UPHENO_0067685 -http://purl.obolibrary.org/obo/GO_0030061 http://purl.obolibrary.org/obo/UPHENO_0067686 -http://purl.obolibrary.org/obo/GO_0036126 http://purl.obolibrary.org/obo/UPHENO_0067687 -http://purl.obolibrary.org/obo/GO_0032280 http://purl.obolibrary.org/obo/UPHENO_0067688 -http://purl.obolibrary.org/obo/GO_0060076 http://purl.obolibrary.org/obo/UPHENO_0067689 -http://purl.obolibrary.org/obo/GO_0060077 http://purl.obolibrary.org/obo/UPHENO_0067690 -http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0067691 -http://purl.obolibrary.org/obo/GO_0005652 http://purl.obolibrary.org/obo/UPHENO_0067692 -http://purl.obolibrary.org/obo/GO_0005773 http://purl.obolibrary.org/obo/UPHENO_0067693 -http://purl.obolibrary.org/obo/GO_0005694 http://purl.obolibrary.org/obo/UPHENO_0067694 -http://purl.obolibrary.org/obo/GO_0044224 http://purl.obolibrary.org/obo/UPHENO_0067695 -http://purl.obolibrary.org/obo/GO_0030017 http://purl.obolibrary.org/obo/UPHENO_0067696 -http://purl.obolibrary.org/obo/GO_0030018 http://purl.obolibrary.org/obo/UPHENO_0067697 -http://purl.obolibrary.org/obo/GO_0032437 http://purl.obolibrary.org/obo/UPHENO_0067698 -http://purl.obolibrary.org/obo/GO_0005777 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http://purl.obolibrary.org/obo/UPHENO_0011847 +http://purl.obolibrary.org/obo/UBERON_0013765 http://purl.obolibrary.org/obo/UPHENO_0011848 +http://purl.obolibrary.org/obo/UBERON_0010371 http://purl.obolibrary.org/obo/UPHENO_0011849 +http://purl.obolibrary.org/obo/UBERON_0015808 http://purl.obolibrary.org/obo/UPHENO_0011851 +http://purl.obolibrary.org/obo/UBERON_0001532 http://purl.obolibrary.org/obo/UPHENO_0011854 +http://purl.obolibrary.org/obo/UBERON_0004921 http://purl.obolibrary.org/obo/UPHENO_0011855 +http://purl.obolibrary.org/obo/UBERON_0001894 http://purl.obolibrary.org/obo/UPHENO_0011856 +http://purl.obolibrary.org/obo/UBERON_0001891 http://purl.obolibrary.org/obo/UPHENO_0011857 +http://purl.obolibrary.org/obo/UBERON_0001893 http://purl.obolibrary.org/obo/UPHENO_0011858 +http://purl.obolibrary.org/obo/UBERON_0002616 http://purl.obolibrary.org/obo/UPHENO_0011859 +http://purl.obolibrary.org/obo/UBERON_0010001 http://purl.obolibrary.org/obo/UPHENO_0011861 +http://purl.obolibrary.org/obo/UBERON_0001638 http://purl.obolibrary.org/obo/UPHENO_0011870 +http://purl.obolibrary.org/obo/UBERON_0003933 http://purl.obolibrary.org/obo/UPHENO_0011871 +http://purl.obolibrary.org/obo/UBERON_0001637 http://purl.obolibrary.org/obo/UPHENO_0011872 +http://purl.obolibrary.org/obo/UBERON_0034944 http://purl.obolibrary.org/obo/UPHENO_0011873 +http://purl.obolibrary.org/obo/UBERON_0001631 http://purl.obolibrary.org/obo/UPHENO_0011875 +http://purl.obolibrary.org/obo/UBERON_0001630 http://purl.obolibrary.org/obo/UPHENO_0011876 +http://purl.obolibrary.org/obo/UBERON_2005295 http://purl.obolibrary.org/obo/UPHENO_0011878 +http://purl.obolibrary.org/obo/UBERON_0011676 http://purl.obolibrary.org/obo/UPHENO_0011879 +http://purl.obolibrary.org/obo/UBERON_2000940 http://purl.obolibrary.org/obo/UPHENO_0011880 +http://purl.obolibrary.org/obo/UBERON_0003920 http://purl.obolibrary.org/obo/UPHENO_0011883 +http://purl.obolibrary.org/obo/UBERON_0001981 http://purl.obolibrary.org/obo/UPHENO_0011884 +http://purl.obolibrary.org/obo/UBERON_0000409 http://purl.obolibrary.org/obo/UPHENO_0011885 +http://purl.obolibrary.org/obo/UBERON_2005044 http://purl.obolibrary.org/obo/UPHENO_0011886 +http://purl.obolibrary.org/obo/UBERON_0010316 http://purl.obolibrary.org/obo/UPHENO_0011887 +http://purl.obolibrary.org/obo/UBERON_0010313 http://purl.obolibrary.org/obo/UPHENO_0011888 +http://purl.obolibrary.org/obo/UBERON_2005073 http://purl.obolibrary.org/obo/UPHENO_0011891 +http://purl.obolibrary.org/obo/UBERON_2005072 http://purl.obolibrary.org/obo/UPHENO_0011892 +http://purl.obolibrary.org/obo/UBERON_0005090 http://purl.obolibrary.org/obo/UPHENO_0011893 +http://purl.obolibrary.org/obo/UBERON_0014907 http://purl.obolibrary.org/obo/UPHENO_0011895 +http://purl.obolibrary.org/obo/UBERON_0000992 http://purl.obolibrary.org/obo/UPHENO_0011899 +http://purl.obolibrary.org/obo/UBERON_0009201 http://purl.obolibrary.org/obo/UPHENO_0011900 +http://purl.obolibrary.org/obo/UBERON_0000991 http://purl.obolibrary.org/obo/UPHENO_0011901 +http://purl.obolibrary.org/obo/UBERON_0007134 http://purl.obolibrary.org/obo/UPHENO_0011909 +http://purl.obolibrary.org/obo/UBERON_0007376 http://purl.obolibrary.org/obo/UPHENO_0011910 +http://purl.obolibrary.org/obo/UBERON_0007132 http://purl.obolibrary.org/obo/UPHENO_0011913 +http://purl.obolibrary.org/obo/UBERON_0018260 http://purl.obolibrary.org/obo/UPHENO_0011916 +http://purl.obolibrary.org/obo/UBERON_0010522 http://purl.obolibrary.org/obo/UPHENO_0011921 +http://purl.obolibrary.org/obo/UBERON_0000966 http://purl.obolibrary.org/obo/UPHENO_0011928 +http://purl.obolibrary.org/obo/UBERON_0005172 http://purl.obolibrary.org/obo/UPHENO_0011931 +http://purl.obolibrary.org/obo/UBERON_0009773 http://purl.obolibrary.org/obo/UPHENO_0011933 +http://purl.obolibrary.org/obo/UBERON_0005058 http://purl.obolibrary.org/obo/UPHENO_0011936 +http://purl.obolibrary.org/obo/UBERON_0001803 http://purl.obolibrary.org/obo/UPHENO_0011937 +http://purl.obolibrary.org/obo/UBERON_0000957 http://purl.obolibrary.org/obo/UPHENO_0011938 +http://purl.obolibrary.org/obo/UBERON_0022303 http://purl.obolibrary.org/obo/UPHENO_0011939 +http://purl.obolibrary.org/obo/UBERON_0001806 http://purl.obolibrary.org/obo/UPHENO_0011940 +http://purl.obolibrary.org/obo/UBERON_0001805 http://purl.obolibrary.org/obo/UPHENO_0011941 +http://purl.obolibrary.org/obo/UBERON_0001800 http://purl.obolibrary.org/obo/UPHENO_0011942 +http://purl.obolibrary.org/obo/UBERON_0000955 http://purl.obolibrary.org/obo/UPHENO_0011943 +http://purl.obolibrary.org/obo/UBERON_0005291 http://purl.obolibrary.org/obo/UPHENO_0011945 +http://purl.obolibrary.org/obo/UBERON_0010521 http://purl.obolibrary.org/obo/UPHENO_0011946 +http://purl.obolibrary.org/obo/UBERON_0001807 http://purl.obolibrary.org/obo/UPHENO_0011947 +http://purl.obolibrary.org/obo/UBERON_0007100 http://purl.obolibrary.org/obo/UPHENO_0011950 +http://purl.obolibrary.org/obo/UBERON_0000947 http://purl.obolibrary.org/obo/UPHENO_0011961 +http://purl.obolibrary.org/obo/UBERON_0000948 http://purl.obolibrary.org/obo/UPHENO_0011963 +http://purl.obolibrary.org/obo/UBERON_2005020 http://purl.obolibrary.org/obo/UPHENO_0011965 +http://purl.obolibrary.org/obo/UBERON_2005025 http://purl.obolibrary.org/obo/UPHENO_0011966 diff --git a/src/patterns/data/automatic/abnormallyDecreasedEfficacyOfProteinLocalizationInCellularComponent.tsv b/src/patterns/data/automatic/abnormallyDecreasedEfficacyOfProteinLocalizationInCellularComponent.tsv index ab063824..97b1df0c 100644 --- a/src/patterns/data/automatic/abnormallyDecreasedEfficacyOfProteinLocalizationInCellularComponent.tsv +++ b/src/patterns/data/automatic/abnormallyDecreasedEfficacyOfProteinLocalizationInCellularComponent.tsv @@ -1,34 +1,34 @@ -location defined_class -http://purl.obolibrary.org/obo/GO_0031254 http://purl.obolibrary.org/obo/UPHENO_0083476 -http://purl.obolibrary.org/obo/GO_0031410 http://purl.obolibrary.org/obo/UPHENO_0083477 -http://purl.obolibrary.org/obo/GO_0005905 http://purl.obolibrary.org/obo/UPHENO_0083478 -http://purl.obolibrary.org/obo/GO_0031252 http://purl.obolibrary.org/obo/UPHENO_0083479 -http://purl.obolibrary.org/obo/GO_0072686 http://purl.obolibrary.org/obo/UPHENO_0083480 -http://purl.obolibrary.org/obo/GO_0062201 http://purl.obolibrary.org/obo/UPHENO_0083481 -http://purl.obolibrary.org/obo/GO_0009986 http://purl.obolibrary.org/obo/UPHENO_0083482 -http://purl.obolibrary.org/obo/GO_0110085 http://purl.obolibrary.org/obo/UPHENO_0089353 -http://purl.obolibrary.org/obo/GO_0044354 http://purl.obolibrary.org/obo/UPHENO_0083483 -http://purl.obolibrary.org/obo/GO_0000331 http://purl.obolibrary.org/obo/UPHENO_0083484 -http://purl.obolibrary.org/obo/GO_0005764 http://purl.obolibrary.org/obo/UPHENO_0083485 -http://purl.obolibrary.org/obo/GO_1990023 http://purl.obolibrary.org/obo/UPHENO_0083486 -http://purl.obolibrary.org/obo/GO_0005765 http://purl.obolibrary.org/obo/UPHENO_0083487 -http://purl.obolibrary.org/obo/GO_0005886 http://purl.obolibrary.org/obo/UPHENO_0083488 -http://purl.obolibrary.org/obo/GO_0044291 http://purl.obolibrary.org/obo/UPHENO_0083489 -http://purl.obolibrary.org/obo/GO_0005815 http://purl.obolibrary.org/obo/UPHENO_0083490 -http://purl.obolibrary.org/obo/GO_0005938 http://purl.obolibrary.org/obo/UPHENO_0083491 -http://purl.obolibrary.org/obo/GO_0031164 http://purl.obolibrary.org/obo/UPHENO_0083492 -http://purl.obolibrary.org/obo/GO_0032154 http://purl.obolibrary.org/obo/UPHENO_0083493 -http://purl.obolibrary.org/obo/GO_0030175 http://purl.obolibrary.org/obo/UPHENO_0083494 -http://purl.obolibrary.org/obo/GO_0031143 http://purl.obolibrary.org/obo/UPHENO_0083495 -http://purl.obolibrary.org/obo/GO_0032195 http://purl.obolibrary.org/obo/UPHENO_0083496 -http://purl.obolibrary.org/obo/GO_0036019 http://purl.obolibrary.org/obo/UPHENO_0083497 -http://purl.obolibrary.org/obo/GO_0016323 http://purl.obolibrary.org/obo/UPHENO_0083498 -http://purl.obolibrary.org/obo/GO_0045335 http://purl.obolibrary.org/obo/UPHENO_0083499 -http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0083500 -http://purl.obolibrary.org/obo/GO_0005635 http://purl.obolibrary.org/obo/UPHENO_0083501 -http://purl.obolibrary.org/obo/GO_0005813 http://purl.obolibrary.org/obo/UPHENO_0083502 -http://purl.obolibrary.org/obo/GO_0005737 http://purl.obolibrary.org/obo/UPHENO_0083503 -http://purl.obolibrary.org/obo/GO_0005730 http://purl.obolibrary.org/obo/UPHENO_0083504 -http://purl.obolibrary.org/obo/GO_0005874 http://purl.obolibrary.org/obo/UPHENO_0083505 -http://purl.obolibrary.org/obo/GO_0005776 http://purl.obolibrary.org/obo/UPHENO_0083506 -http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0083507 +location defined_class defined_class_name +http://purl.obolibrary.org/obo/GO_0031254 http://purl.obolibrary.org/obo/UPHENO_0083476 +http://purl.obolibrary.org/obo/GO_0031410 http://purl.obolibrary.org/obo/UPHENO_0083477 +http://purl.obolibrary.org/obo/GO_0005905 http://purl.obolibrary.org/obo/UPHENO_0083478 +http://purl.obolibrary.org/obo/GO_0031252 http://purl.obolibrary.org/obo/UPHENO_0083479 +http://purl.obolibrary.org/obo/GO_0072686 http://purl.obolibrary.org/obo/UPHENO_0083480 +http://purl.obolibrary.org/obo/GO_0062201 http://purl.obolibrary.org/obo/UPHENO_0083481 +http://purl.obolibrary.org/obo/GO_0009986 http://purl.obolibrary.org/obo/UPHENO_0083482 +http://purl.obolibrary.org/obo/GO_0110085 http://purl.obolibrary.org/obo/UPHENO_0089353 +http://purl.obolibrary.org/obo/GO_0044354 http://purl.obolibrary.org/obo/UPHENO_0083483 +http://purl.obolibrary.org/obo/GO_0000331 http://purl.obolibrary.org/obo/UPHENO_0083484 +http://purl.obolibrary.org/obo/GO_0005764 http://purl.obolibrary.org/obo/UPHENO_0083485 +http://purl.obolibrary.org/obo/GO_1990023 http://purl.obolibrary.org/obo/UPHENO_0083486 +http://purl.obolibrary.org/obo/GO_0005765 http://purl.obolibrary.org/obo/UPHENO_0083487 +http://purl.obolibrary.org/obo/GO_0005886 http://purl.obolibrary.org/obo/UPHENO_0083488 +http://purl.obolibrary.org/obo/GO_0044291 http://purl.obolibrary.org/obo/UPHENO_0083489 +http://purl.obolibrary.org/obo/GO_0005815 http://purl.obolibrary.org/obo/UPHENO_0083490 +http://purl.obolibrary.org/obo/GO_0005938 http://purl.obolibrary.org/obo/UPHENO_0083491 +http://purl.obolibrary.org/obo/GO_0031164 http://purl.obolibrary.org/obo/UPHENO_0083492 +http://purl.obolibrary.org/obo/GO_0032154 http://purl.obolibrary.org/obo/UPHENO_0083493 +http://purl.obolibrary.org/obo/GO_0030175 http://purl.obolibrary.org/obo/UPHENO_0083494 +http://purl.obolibrary.org/obo/GO_0031143 http://purl.obolibrary.org/obo/UPHENO_0083495 +http://purl.obolibrary.org/obo/GO_0032195 http://purl.obolibrary.org/obo/UPHENO_0083496 +http://purl.obolibrary.org/obo/GO_0036019 http://purl.obolibrary.org/obo/UPHENO_0083497 +http://purl.obolibrary.org/obo/GO_0016323 http://purl.obolibrary.org/obo/UPHENO_0083498 +http://purl.obolibrary.org/obo/GO_0045335 http://purl.obolibrary.org/obo/UPHENO_0083499 +http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0083500 +http://purl.obolibrary.org/obo/GO_0005635 http://purl.obolibrary.org/obo/UPHENO_0083501 +http://purl.obolibrary.org/obo/GO_0005813 http://purl.obolibrary.org/obo/UPHENO_0083502 +http://purl.obolibrary.org/obo/GO_0005737 http://purl.obolibrary.org/obo/UPHENO_0083503 +http://purl.obolibrary.org/obo/GO_0005730 http://purl.obolibrary.org/obo/UPHENO_0083504 +http://purl.obolibrary.org/obo/GO_0005874 http://purl.obolibrary.org/obo/UPHENO_0083505 +http://purl.obolibrary.org/obo/GO_0005776 http://purl.obolibrary.org/obo/UPHENO_0083506 +http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0083507 decreased protein localization in cell nucleus diff --git a/src/patterns/data/automatic/abnormallyDecreasedSizeOfCellularComponent.tsv b/src/patterns/data/automatic/abnormallyDecreasedSizeOfCellularComponent.tsv index cd17f078..ca65a719 100644 --- a/src/patterns/data/automatic/abnormallyDecreasedSizeOfCellularComponent.tsv +++ b/src/patterns/data/automatic/abnormallyDecreasedSizeOfCellularComponent.tsv @@ -1,18 +1,18 @@ -entity defined_class -http://purl.obolibrary.org/obo/GO_0005739 http://purl.obolibrary.org/obo/UPHENO_0082011 -http://purl.obolibrary.org/obo/GO_0097226 http://purl.obolibrary.org/obo/UPHENO_0088542 -http://purl.obolibrary.org/obo/GO_0042470 http://purl.obolibrary.org/obo/UPHENO_0082012 -http://purl.obolibrary.org/obo/GO_0061827 http://purl.obolibrary.org/obo/UPHENO_0084413 -http://purl.obolibrary.org/obo/GO_0097208 http://purl.obolibrary.org/obo/UPHENO_0085672 -http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0082013 -http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0082014 -http://purl.obolibrary.org/obo/GO_0032010 http://purl.obolibrary.org/obo/UPHENO_0083992 -http://purl.obolibrary.org/obo/GO_0044352 http://purl.obolibrary.org/obo/UPHENO_0083993 -http://purl.obolibrary.org/obo/GO_0031143 http://purl.obolibrary.org/obo/UPHENO_0083994 -http://purl.obolibrary.org/obo/GO_0000235 http://purl.obolibrary.org/obo/UPHENO_0083996 -http://purl.obolibrary.org/obo/GO_0005764 http://purl.obolibrary.org/obo/UPHENO_0083997 -http://purl.obolibrary.org/obo/GO_0005768 http://purl.obolibrary.org/obo/UPHENO_0083998 -http://purl.obolibrary.org/obo/GO_0032195 http://purl.obolibrary.org/obo/UPHENO_0083999 -http://purl.obolibrary.org/obo/GO_0000331 http://purl.obolibrary.org/obo/UPHENO_0084000 -http://purl.obolibrary.org/obo/GO_0005811 http://purl.obolibrary.org/obo/UPHENO_0082015 -http://purl.obolibrary.org/obo/GO_0005773 http://purl.obolibrary.org/obo/UPHENO_0083995 +entity defined_class defined_class_name +http://purl.obolibrary.org/obo/GO_0005739 http://purl.obolibrary.org/obo/UPHENO_0082011 +http://purl.obolibrary.org/obo/GO_0097226 http://purl.obolibrary.org/obo/UPHENO_0088542 +http://purl.obolibrary.org/obo/GO_0042470 http://purl.obolibrary.org/obo/UPHENO_0082012 +http://purl.obolibrary.org/obo/GO_0061827 http://purl.obolibrary.org/obo/UPHENO_0084413 +http://purl.obolibrary.org/obo/GO_0097208 http://purl.obolibrary.org/obo/UPHENO_0085672 +http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0082013 +http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0082014 decreased size of the cell nucleus +http://purl.obolibrary.org/obo/GO_0032010 http://purl.obolibrary.org/obo/UPHENO_0083992 +http://purl.obolibrary.org/obo/GO_0044352 http://purl.obolibrary.org/obo/UPHENO_0083993 +http://purl.obolibrary.org/obo/GO_0031143 http://purl.obolibrary.org/obo/UPHENO_0083994 +http://purl.obolibrary.org/obo/GO_0000235 http://purl.obolibrary.org/obo/UPHENO_0083996 +http://purl.obolibrary.org/obo/GO_0005764 http://purl.obolibrary.org/obo/UPHENO_0083997 +http://purl.obolibrary.org/obo/GO_0005768 http://purl.obolibrary.org/obo/UPHENO_0083998 +http://purl.obolibrary.org/obo/GO_0032195 http://purl.obolibrary.org/obo/UPHENO_0083999 +http://purl.obolibrary.org/obo/GO_0000331 http://purl.obolibrary.org/obo/UPHENO_0084000 +http://purl.obolibrary.org/obo/GO_0005811 http://purl.obolibrary.org/obo/UPHENO_0082015 +http://purl.obolibrary.org/obo/GO_0005773 http://purl.obolibrary.org/obo/UPHENO_0083995 diff --git a/src/patterns/data/automatic/abnormallyIncreasedEfficacyOfProteinLocalizationInCellularComponent.tsv b/src/patterns/data/automatic/abnormallyIncreasedEfficacyOfProteinLocalizationInCellularComponent.tsv index 5ad7fcec..5c387e0e 100644 --- a/src/patterns/data/automatic/abnormallyIncreasedEfficacyOfProteinLocalizationInCellularComponent.tsv +++ b/src/patterns/data/automatic/abnormallyIncreasedEfficacyOfProteinLocalizationInCellularComponent.tsv @@ -1,33 +1,33 @@ -location defined_class -http://purl.obolibrary.org/obo/GO_0031254 http://purl.obolibrary.org/obo/UPHENO_0083857 -http://purl.obolibrary.org/obo/GO_0031410 http://purl.obolibrary.org/obo/UPHENO_0083858 -http://purl.obolibrary.org/obo/GO_0005905 http://purl.obolibrary.org/obo/UPHENO_0083859 -http://purl.obolibrary.org/obo/GO_0031252 http://purl.obolibrary.org/obo/UPHENO_0083860 -http://purl.obolibrary.org/obo/GO_0072686 http://purl.obolibrary.org/obo/UPHENO_0083861 -http://purl.obolibrary.org/obo/GO_0062201 http://purl.obolibrary.org/obo/UPHENO_0083862 -http://purl.obolibrary.org/obo/GO_0009986 http://purl.obolibrary.org/obo/UPHENO_0083863 -http://purl.obolibrary.org/obo/GO_0044354 http://purl.obolibrary.org/obo/UPHENO_0083864 -http://purl.obolibrary.org/obo/GO_0000331 http://purl.obolibrary.org/obo/UPHENO_0083865 -http://purl.obolibrary.org/obo/GO_0005764 http://purl.obolibrary.org/obo/UPHENO_0083866 -http://purl.obolibrary.org/obo/GO_1990023 http://purl.obolibrary.org/obo/UPHENO_0083867 -http://purl.obolibrary.org/obo/GO_0005765 http://purl.obolibrary.org/obo/UPHENO_0083868 -http://purl.obolibrary.org/obo/GO_0005886 http://purl.obolibrary.org/obo/UPHENO_0083869 -http://purl.obolibrary.org/obo/GO_0044291 http://purl.obolibrary.org/obo/UPHENO_0083870 -http://purl.obolibrary.org/obo/GO_0005815 http://purl.obolibrary.org/obo/UPHENO_0083871 -http://purl.obolibrary.org/obo/GO_0031164 http://purl.obolibrary.org/obo/UPHENO_0083872 -http://purl.obolibrary.org/obo/GO_0005938 http://purl.obolibrary.org/obo/UPHENO_0083873 -http://purl.obolibrary.org/obo/GO_0032154 http://purl.obolibrary.org/obo/UPHENO_0083874 -http://purl.obolibrary.org/obo/GO_0030175 http://purl.obolibrary.org/obo/UPHENO_0083875 -http://purl.obolibrary.org/obo/GO_0031143 http://purl.obolibrary.org/obo/UPHENO_0083876 -http://purl.obolibrary.org/obo/GO_0032195 http://purl.obolibrary.org/obo/UPHENO_0083877 -http://purl.obolibrary.org/obo/GO_0036019 http://purl.obolibrary.org/obo/UPHENO_0083878 -http://purl.obolibrary.org/obo/GO_0016323 http://purl.obolibrary.org/obo/UPHENO_0083879 -http://purl.obolibrary.org/obo/GO_0045335 http://purl.obolibrary.org/obo/UPHENO_0083880 -http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0083881 -http://purl.obolibrary.org/obo/GO_0005635 http://purl.obolibrary.org/obo/UPHENO_0083882 -http://purl.obolibrary.org/obo/GO_0005813 http://purl.obolibrary.org/obo/UPHENO_0083883 -http://purl.obolibrary.org/obo/GO_0005737 http://purl.obolibrary.org/obo/UPHENO_0083884 -http://purl.obolibrary.org/obo/GO_0005730 http://purl.obolibrary.org/obo/UPHENO_0083885 -http://purl.obolibrary.org/obo/GO_0005874 http://purl.obolibrary.org/obo/UPHENO_0083886 -http://purl.obolibrary.org/obo/GO_0005776 http://purl.obolibrary.org/obo/UPHENO_0083887 -http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0083888 +location defined_class defined_class_name +http://purl.obolibrary.org/obo/GO_0031254 http://purl.obolibrary.org/obo/UPHENO_0083857 +http://purl.obolibrary.org/obo/GO_0031410 http://purl.obolibrary.org/obo/UPHENO_0083858 +http://purl.obolibrary.org/obo/GO_0005905 http://purl.obolibrary.org/obo/UPHENO_0083859 +http://purl.obolibrary.org/obo/GO_0031252 http://purl.obolibrary.org/obo/UPHENO_0083860 +http://purl.obolibrary.org/obo/GO_0072686 http://purl.obolibrary.org/obo/UPHENO_0083861 +http://purl.obolibrary.org/obo/GO_0062201 http://purl.obolibrary.org/obo/UPHENO_0083862 +http://purl.obolibrary.org/obo/GO_0009986 http://purl.obolibrary.org/obo/UPHENO_0083863 +http://purl.obolibrary.org/obo/GO_0044354 http://purl.obolibrary.org/obo/UPHENO_0083864 +http://purl.obolibrary.org/obo/GO_0000331 http://purl.obolibrary.org/obo/UPHENO_0083865 +http://purl.obolibrary.org/obo/GO_0005764 http://purl.obolibrary.org/obo/UPHENO_0083866 +http://purl.obolibrary.org/obo/GO_1990023 http://purl.obolibrary.org/obo/UPHENO_0083867 +http://purl.obolibrary.org/obo/GO_0005765 http://purl.obolibrary.org/obo/UPHENO_0083868 +http://purl.obolibrary.org/obo/GO_0005886 http://purl.obolibrary.org/obo/UPHENO_0083869 +http://purl.obolibrary.org/obo/GO_0044291 http://purl.obolibrary.org/obo/UPHENO_0083870 +http://purl.obolibrary.org/obo/GO_0005815 http://purl.obolibrary.org/obo/UPHENO_0083871 +http://purl.obolibrary.org/obo/GO_0031164 http://purl.obolibrary.org/obo/UPHENO_0083872 +http://purl.obolibrary.org/obo/GO_0005938 http://purl.obolibrary.org/obo/UPHENO_0083873 +http://purl.obolibrary.org/obo/GO_0032154 http://purl.obolibrary.org/obo/UPHENO_0083874 +http://purl.obolibrary.org/obo/GO_0030175 http://purl.obolibrary.org/obo/UPHENO_0083875 +http://purl.obolibrary.org/obo/GO_0031143 http://purl.obolibrary.org/obo/UPHENO_0083876 +http://purl.obolibrary.org/obo/GO_0032195 http://purl.obolibrary.org/obo/UPHENO_0083877 +http://purl.obolibrary.org/obo/GO_0036019 http://purl.obolibrary.org/obo/UPHENO_0083878 +http://purl.obolibrary.org/obo/GO_0016323 http://purl.obolibrary.org/obo/UPHENO_0083879 +http://purl.obolibrary.org/obo/GO_0045335 http://purl.obolibrary.org/obo/UPHENO_0083880 +http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0083881 +http://purl.obolibrary.org/obo/GO_0005635 http://purl.obolibrary.org/obo/UPHENO_0083882 +http://purl.obolibrary.org/obo/GO_0005813 http://purl.obolibrary.org/obo/UPHENO_0083883 +http://purl.obolibrary.org/obo/GO_0005737 http://purl.obolibrary.org/obo/UPHENO_0083884 +http://purl.obolibrary.org/obo/GO_0005730 http://purl.obolibrary.org/obo/UPHENO_0083885 +http://purl.obolibrary.org/obo/GO_0005874 http://purl.obolibrary.org/obo/UPHENO_0083886 +http://purl.obolibrary.org/obo/GO_0005776 http://purl.obolibrary.org/obo/UPHENO_0083887 +http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0083888 increased protein localization in cell nucleus diff --git a/src/patterns/data/automatic/abnormallyIncreasedNumberOfCellularComponent.tsv b/src/patterns/data/automatic/abnormallyIncreasedNumberOfCellularComponent.tsv index 483aea4e..fdb4a7d7 100644 --- a/src/patterns/data/automatic/abnormallyIncreasedNumberOfCellularComponent.tsv +++ b/src/patterns/data/automatic/abnormallyIncreasedNumberOfCellularComponent.tsv @@ -1,21 +1,21 @@ -cellular_component defined_class -http://purl.obolibrary.org/obo/GO_0043197 http://purl.obolibrary.org/obo/UPHENO_0083031 -http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0063672 -http://purl.obolibrary.org/obo/GO_0002185 http://purl.obolibrary.org/obo/UPHENO_0063673 -http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0063674 -http://purl.obolibrary.org/obo/GO_0001750 http://purl.obolibrary.org/obo/UPHENO_0063677 -http://purl.obolibrary.org/obo/GO_0042827 http://purl.obolibrary.org/obo/UPHENO_0063669 -http://purl.obolibrary.org/obo/GO_0005739 http://purl.obolibrary.org/obo/UPHENO_0063670 -http://purl.obolibrary.org/obo/GO_0097208 http://purl.obolibrary.org/obo/UPHENO_0063671 -http://purl.obolibrary.org/obo/GO_0061827 http://purl.obolibrary.org/obo/UPHENO_0084422 -http://purl.obolibrary.org/obo/GO_0031091 http://purl.obolibrary.org/obo/UPHENO_0063675 -http://purl.obolibrary.org/obo/GO_0042613 http://purl.obolibrary.org/obo/UPHENO_0063676 -http://purl.obolibrary.org/obo/GO_0042612 http://purl.obolibrary.org/obo/UPHENO_0063678 -http://purl.obolibrary.org/obo/GO_0036126 http://purl.obolibrary.org/obo/UPHENO_0084423 -http://purl.obolibrary.org/obo/GO_0005815 http://purl.obolibrary.org/obo/UPHENO_0083032 -http://purl.obolibrary.org/obo/GO_0044352 http://purl.obolibrary.org/obo/UPHENO_0083033 -http://purl.obolibrary.org/obo/GO_0005776 http://purl.obolibrary.org/obo/UPHENO_0083034 -http://purl.obolibrary.org/obo/GO_0005813 http://purl.obolibrary.org/obo/UPHENO_0083035 -http://purl.obolibrary.org/obo/GO_0000331 http://purl.obolibrary.org/obo/UPHENO_0083036 -http://purl.obolibrary.org/obo/GO_0030428 http://purl.obolibrary.org/obo/UPHENO_0080533 -http://purl.obolibrary.org/obo/GO_0005811 http://purl.obolibrary.org/obo/UPHENO_0080534 +cellular_component defined_class defined_class_name +http://purl.obolibrary.org/obo/GO_0043197 http://purl.obolibrary.org/obo/UPHENO_0083031 +http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0063672 +http://purl.obolibrary.org/obo/GO_0002185 http://purl.obolibrary.org/obo/UPHENO_0063673 +http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0063674 increased number of cell nucleus +http://purl.obolibrary.org/obo/GO_0001750 http://purl.obolibrary.org/obo/UPHENO_0063677 +http://purl.obolibrary.org/obo/GO_0042827 http://purl.obolibrary.org/obo/UPHENO_0063669 +http://purl.obolibrary.org/obo/GO_0005739 http://purl.obolibrary.org/obo/UPHENO_0063670 +http://purl.obolibrary.org/obo/GO_0097208 http://purl.obolibrary.org/obo/UPHENO_0063671 +http://purl.obolibrary.org/obo/GO_0061827 http://purl.obolibrary.org/obo/UPHENO_0084422 +http://purl.obolibrary.org/obo/GO_0031091 http://purl.obolibrary.org/obo/UPHENO_0063675 +http://purl.obolibrary.org/obo/GO_0042613 http://purl.obolibrary.org/obo/UPHENO_0063676 +http://purl.obolibrary.org/obo/GO_0042612 http://purl.obolibrary.org/obo/UPHENO_0063678 +http://purl.obolibrary.org/obo/GO_0036126 http://purl.obolibrary.org/obo/UPHENO_0084423 +http://purl.obolibrary.org/obo/GO_0005815 http://purl.obolibrary.org/obo/UPHENO_0083032 +http://purl.obolibrary.org/obo/GO_0044352 http://purl.obolibrary.org/obo/UPHENO_0083033 +http://purl.obolibrary.org/obo/GO_0005776 http://purl.obolibrary.org/obo/UPHENO_0083034 +http://purl.obolibrary.org/obo/GO_0005813 http://purl.obolibrary.org/obo/UPHENO_0083035 +http://purl.obolibrary.org/obo/GO_0000331 http://purl.obolibrary.org/obo/UPHENO_0083036 +http://purl.obolibrary.org/obo/GO_0030428 http://purl.obolibrary.org/obo/UPHENO_0080533 +http://purl.obolibrary.org/obo/GO_0005811 http://purl.obolibrary.org/obo/UPHENO_0080534 diff --git a/src/patterns/data/automatic/abnormallyIncreasedSizeOfCellularComponent.tsv b/src/patterns/data/automatic/abnormallyIncreasedSizeOfCellularComponent.tsv index 8fd39514..5862b636 100644 --- a/src/patterns/data/automatic/abnormallyIncreasedSizeOfCellularComponent.tsv +++ b/src/patterns/data/automatic/abnormallyIncreasedSizeOfCellularComponent.tsv @@ -1,16 +1,16 @@ -entity defined_class -http://purl.obolibrary.org/obo/GO_0005739 http://purl.obolibrary.org/obo/UPHENO_0080307 -http://purl.obolibrary.org/obo/GO_0097226 http://purl.obolibrary.org/obo/UPHENO_0089364 -http://purl.obolibrary.org/obo/GO_0042470 http://purl.obolibrary.org/obo/UPHENO_0080308 -http://purl.obolibrary.org/obo/GO_0061827 http://purl.obolibrary.org/obo/UPHENO_0084405 -http://purl.obolibrary.org/obo/GO_0097208 http://purl.obolibrary.org/obo/UPHENO_0086350 -http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0080309 -http://purl.obolibrary.org/obo/GO_0001533 http://purl.obolibrary.org/obo/UPHENO_0080310 -http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0080311 -http://purl.obolibrary.org/obo/GO_0032010 http://purl.obolibrary.org/obo/UPHENO_0082991 -http://purl.obolibrary.org/obo/GO_0031143 http://purl.obolibrary.org/obo/UPHENO_0082992 -http://purl.obolibrary.org/obo/GO_0005764 http://purl.obolibrary.org/obo/UPHENO_0082993 -http://purl.obolibrary.org/obo/GO_0005768 http://purl.obolibrary.org/obo/UPHENO_0082994 -http://purl.obolibrary.org/obo/GO_0032195 http://purl.obolibrary.org/obo/UPHENO_0082995 -http://purl.obolibrary.org/obo/GO_0000331 http://purl.obolibrary.org/obo/UPHENO_0089365 -http://purl.obolibrary.org/obo/GO_0005811 http://purl.obolibrary.org/obo/UPHENO_0080312 +entity defined_class defined_class_name +http://purl.obolibrary.org/obo/GO_0005739 http://purl.obolibrary.org/obo/UPHENO_0080307 +http://purl.obolibrary.org/obo/GO_0097226 http://purl.obolibrary.org/obo/UPHENO_0089364 +http://purl.obolibrary.org/obo/GO_0042470 http://purl.obolibrary.org/obo/UPHENO_0080308 +http://purl.obolibrary.org/obo/GO_0061827 http://purl.obolibrary.org/obo/UPHENO_0084405 +http://purl.obolibrary.org/obo/GO_0097208 http://purl.obolibrary.org/obo/UPHENO_0086350 +http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0080309 +http://purl.obolibrary.org/obo/GO_0001533 http://purl.obolibrary.org/obo/UPHENO_0080310 +http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0080311 increased size of the cell nucleus +http://purl.obolibrary.org/obo/GO_0032010 http://purl.obolibrary.org/obo/UPHENO_0082991 +http://purl.obolibrary.org/obo/GO_0031143 http://purl.obolibrary.org/obo/UPHENO_0082992 +http://purl.obolibrary.org/obo/GO_0005764 http://purl.obolibrary.org/obo/UPHENO_0082993 +http://purl.obolibrary.org/obo/GO_0005768 http://purl.obolibrary.org/obo/UPHENO_0082994 +http://purl.obolibrary.org/obo/GO_0032195 http://purl.obolibrary.org/obo/UPHENO_0082995 +http://purl.obolibrary.org/obo/GO_0000331 http://purl.obolibrary.org/obo/UPHENO_0089365 +http://purl.obolibrary.org/obo/GO_0005811 http://purl.obolibrary.org/obo/UPHENO_0080312 diff --git a/src/patterns/data/automatic/abnormallyRotatedAnatomicalEntity.tsv b/src/patterns/data/automatic/abnormallyRotatedAnatomicalEntity.tsv index 0202c0fd..2a269171 100644 --- a/src/patterns/data/automatic/abnormallyRotatedAnatomicalEntity.tsv +++ b/src/patterns/data/automatic/abnormallyRotatedAnatomicalEntity.tsv @@ -1,11 +1,11 @@ -anatomical_entity defined_class -http://purl.obolibrary.org/obo/UBERON_0002470 http://purl.obolibrary.org/obo/UPHENO_0089841 -http://purl.obolibrary.org/obo/UBERON_0001062 http://purl.obolibrary.org/obo/UPHENO_0082022 -http://purl.obolibrary.org/obo/UBERON_0000160 http://purl.obolibrary.org/obo/UPHENO_0085171 -http://purl.obolibrary.org/obo/UBERON_0001691 http://purl.obolibrary.org/obo/UPHENO_0082023 -http://purl.obolibrary.org/obo/UBERON_0002108 http://purl.obolibrary.org/obo/UPHENO_0082024 -http://purl.obolibrary.org/obo/UBERON_0005409 http://purl.obolibrary.org/obo/UPHENO_0082025 -http://purl.obolibrary.org/obo/UBERON_0002113 http://purl.obolibrary.org/obo/UPHENO_0082026 -http://purl.obolibrary.org/obo/UBERON_0001155 http://purl.obolibrary.org/obo/UPHENO_0082027 -http://purl.obolibrary.org/obo/UBERON_0001045 http://purl.obolibrary.org/obo/UPHENO_0082028 -http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0082029 +anatomical_entity defined_class defined_class_name +http://purl.obolibrary.org/obo/UBERON_0002470 http://purl.obolibrary.org/obo/UPHENO_0089841 +http://purl.obolibrary.org/obo/UBERON_0001062 http://purl.obolibrary.org/obo/UPHENO_0082022 +http://purl.obolibrary.org/obo/UBERON_0000160 http://purl.obolibrary.org/obo/UPHENO_0085171 +http://purl.obolibrary.org/obo/UBERON_0001691 http://purl.obolibrary.org/obo/UPHENO_0082023 +http://purl.obolibrary.org/obo/UBERON_0002108 http://purl.obolibrary.org/obo/UPHENO_0082024 +http://purl.obolibrary.org/obo/UBERON_0005409 http://purl.obolibrary.org/obo/UPHENO_0082025 +http://purl.obolibrary.org/obo/UBERON_0002113 http://purl.obolibrary.org/obo/UPHENO_0082026 +http://purl.obolibrary.org/obo/UBERON_0001155 http://purl.obolibrary.org/obo/UPHENO_0082027 +http://purl.obolibrary.org/obo/UBERON_0001045 http://purl.obolibrary.org/obo/UPHENO_0082028 +http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0082029 rotated cell nucleus From beedc4e3f1a7ac8ffb6da678d7ffe86848482bc6 Mon Sep 17 00:00:00 2001 From: matentzn Date: Sun, 5 Apr 2026 05:34:06 +0000 Subject: [PATCH 2/2] Add .claude/ to gitignore https://claude.ai/code/session_01ChK2mm7BcsKrL7Hwjksw4f --- .gitignore | 1 + 1 file changed, 1 insertion(+) diff --git a/.gitignore b/.gitignore index f8cfb6a0..7dea5a00 100644 --- a/.gitignore +++ b/.gitignore @@ -314,6 +314,7 @@ src/ontology/reports/obsoletes.tsv src/ontology/reports/synonyms.tsv src/ontology/reports/xrefs.tsv .idea/ +.claude/ *.pyc /imports /patterns