From 4b483370b3a1ae4199943c7cfc796f0f791608ca Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Fri, 24 Apr 2026 12:12:05 +0100 Subject: [PATCH] Add shinyngs to Available Studios Co-Authored-By: Claude Opus 4.7 (1M context) --- README.md | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index d62dcc7..6330ba8 100644 --- a/README.md +++ b/README.md @@ -16,6 +16,7 @@ This repository uses a **branch-per-studio** model (similar to [nf-core/test-dat | [`cellxgene`](https://github.com/seqeralabs/custom-studios-examples/tree/cellxgene) | CellxGene | Interactive single-cell data visualization | | [`streamlit`](https://github.com/seqeralabs/custom-studios-examples/tree/streamlit) | Streamlit | MultiQC visualization using Streamlit | | [`shiny`](https://github.com/seqeralabs/custom-studios-examples/tree/shiny) | R Shiny | Interactive data visualization with R Shiny | +| [`shinyngs`](https://github.com/seqeralabs/custom-studios-examples/tree/shinyngs) | Shinyngs | RNA-seq exploration with the `shinyngs` R package | | [`ttyd`](https://github.com/seqeralabs/custom-studios-examples/tree/ttyd) | TTYD | Web-based terminal with bioinformatics tools | ## Quick Start: Launch from Git Repository @@ -23,7 +24,7 @@ This repository uses a **branch-per-studio** model (similar to [nf-core/test-dat 1. Navigate to **Studios** > **Add Studio** in your Seqera Platform workspace 2. Select **Git repository** as the source 3. Enter the repository URL: `https://github.com/seqeralabs/custom-studios-examples` -4. Select the branch for the studio you want (e.g., `marimo`, `cellxgene`, `streamlit`, `shiny`, `ttyd`) +4. Select the branch for the studio you want (e.g., `marimo`, `cellxgene`, `streamlit`, `shiny`, `shinyngs`, `ttyd`) 5. Select your compute environment 6. Click **Add** then **Start** @@ -41,6 +42,7 @@ ghcr.io/seqeralabs/custom-studios-examples/marimo:latest ghcr.io/seqeralabs/custom-studios-examples/cellxgene:latest ghcr.io/seqeralabs/custom-studios-examples/streamlit:latest ghcr.io/seqeralabs/custom-studios-examples/shiny:latest +ghcr.io/seqeralabs/custom-studios-examples/shinyngs:latest ghcr.io/seqeralabs/custom-studios-examples/ttyd:latest ``` @@ -85,7 +87,7 @@ Some studios support environment variable configuration: | CellxGene | `ANNOTATIONS_DIR` | `/user-data/cellxgene` | Annotations storage | | Shiny | `DATA_PATH` | `s3://shiny-inputs/data.csv` | Path to CSV data file | -Studios without listed variables (Marimo, Streamlit, TTYD) work with their default configurations. +Studios without listed variables (Marimo, Shinyngs, Streamlit, TTYD) work with their default configurations. ## Common Features