AIND Ephys Portal

A Panel application for Ephys data visualization.

Description

The AIND Ephys Portal is a web-based application built with Panel that provides a user interface for searching and visualizing Ephys data.

Features

• Search bar for querying Ephys data
• SpikeInterface GUI to view and curate ephys data

Installation

# Clone the repository
git clone https://github.com/AllenNeuralDynamics/aind-ephys-portal.git
cd aind-ephys-portal

# Install the package
pip install -e .

Usage

To run the Ephys Portal you can either use tha launch.sh script:

AWS_PROFILE=your-profile

# Make sure your SSO session is active
aws sso login --profile $AWS_PROFILE

python entrypoint.py --port 8000 (default) --address 0.0.0.0 (default)

This will start a Panel server and make the application available in your web browser.

Development

To install development dependencies:

pip install -e ".[dev]"

Local dev

1. Build the Docker image locally and run a Docker container:

docker build -t aind-ephys-portal .

AWS_PROFILE=your-profile

# Make sure your SSO session is active
aws sso login --profile $AWS_PROFILE

# Export temporary credentials and run Docker
eval "$(aws configure export-credentials --profile $AWS_PROFILE --format env)"
docker run --rm -e AWS_ACCESS_KEY_ID -e AWS_SECRET_ACCESS_KEY -e AWS_SESSION_TOKEN -e ALLOW_WEBSOCKET_ORIGIN=0.0.0.0:8000 -p 8000:8000 aind-ephys-portal

2. Navigate to '0.0.0.0:8000` to view the app.

License

This project is licensed under the terms of the LICENSE file included in the repository.