madeline-scyphers · Oct 15, 2026 · Oct 15, 2026
diff --git a/src/dram_rules/data/sumarize_sheets/assimilation_and_cofactor_metabolism.tsv b/src/dram_rules/data/sumarize_sheets/assimilation_and_cofactor_metabolism.tsv
diff --git a/src/dram_rules/data/sumarize_sheets/cellular_machinery.tsv b/src/dram_rules/data/sumarize_sheets/cellular_machinery.tsv
diff --git a/src/dram_rules/data/sumarize_sheets/distill_ag.tsv b/src/dram_rules/data/sumarize_sheets/distill_ag.tsv
diff --git a/src/dram_rules/data/sumarize_sheets/distill_aquatic.tsv b/src/dram_rules/data/sumarize_sheets/distill_aquatic.tsv
diff --git a/src/dram_rules/data/sumarize_sheets/distill_bgc.tsv b/src/dram_rules/data/sumarize_sheets/distill_bgc.tsv
diff --git a/src/dram_rules/data/sumarize_sheets/distill_eng_sys.tsv b/src/dram_rules/data/sumarize_sheets/distill_eng_sys.tsv
diff --git a/src/dram_rules/data/sumarize_sheets/distill_gut.tsv b/src/dram_rules/data/sumarize_sheets/distill_gut.tsv
diff --git a/src/dram_rules/data/sumarize_sheets/energy_acquisition_bioenergetics.tsv b/src/dram_rules/data/sumarize_sheets/energy_acquisition_bioenergetics.tsv
diff --git a/src/dram_rules/data/sumarize_sheets/environmental_interaction_and_adaptation.tsv b/src/dram_rules/data/sumarize_sheets/environmental_interaction_and_adaptation.tsv
diff --git a/src/dram_rules/data/traits_rules.tsv b/src/dram_rules/data/traits_rules.tsv
@@ -0,0 +1,28 @@
+name	rule	rule_options	topic_ecosystem
+phototroph	@phototroph		traits
+CO2-fixation	@CO2fixation		traits
+hydrogen-metabolism	@HydrogenUse		traits
+obligate-fermenter	@Fermenter		traits
+aerobic	@Aerobe		traits
+microaerophillic	@Microaerophillic		traits
+dissimilatory-nitrogen-reduction	@Nreducer		traits
+dissimilatory-nitrate-reduction-to-ammonium (partial or full)	@DNRA		traits
+aerobic-ammonia-oxidizer	@AerobicAmmoniaOxidizer		traits
+nitrite-oxidizer	@NitriteOxidoreductase		traits
+comammox	@Comammox		traits
+anaerobic-ammonium-oxidation	@Annamox		traits
+nitrogen-fixer	@nitrogen-fixer		traits
+iron-reduction	@IronReduction		traits
+iron-oxidation	@IronOxidation		traits
+sulfate-reduction	@Sulfatereducer		traits
+non-sulfate-sulfur-reduction	@Non-sulfate-sulfur-reduction		traits
+sulfur-oxidizer	@sulfateoxidizer		traits
+methanogen or ANME	@Methanogen	"{""include_when"":{""all_columns_absent"":[""taxonomy""]}}"	traits
+hydrogenotrophic-methanogen	@hydrogenotrophic	"{""include_when"":{""all_columns_present"":[""taxonomy""]}}"	traits
+acetoclastic-methanogen	@acetoclastic	"{""include_when"":{""all_columns_present"":[""taxonomy""]}}"	traits
+methylotrophic-methanogen	@methylotroph	"{""include_when"":{""all_columns_present"":[""taxonomy""]}}"	traits
+aerobic-methanotroph	@AerobicMethanotroph		traits
+anaerobic-methanotrophic-Archaea	@anaerobic-methanotrophic-Archaea	"{""include_when"":{""all_columns_present"":[""taxonomy""]}}"	traits
+nitrite-oxidizer-or-nitrate-reducer	@NOxorRed		traits
+ammonia-or-methane-oxidizer	@AmmoniaMethaneOxidizer		traits
+probable-iron-reduction	@ProbIronReduction		traits