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remove workflow_bin_path for taxprofiler #4787

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remove workflow_bin_path for taxprofiler #4787

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1 change: 0 additions & 1 deletion cg/meta/workflow/nf_analysis.py
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Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,6 @@ def __init__(self, config: CGConfig, workflow: Workflow):
super().__init__(workflow=workflow, config=config)
self.workflow: Workflow = workflow
self.root_dir: str | None = None
self.workflow_bin_path: str | None = None
self.references: str | None = None
self.profile: str | None = None
self.conda_env: str | None = None
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1 change: 0 additions & 1 deletion cg/meta/workflow/taxprofiler.py
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Expand Up @@ -33,7 +33,6 @@ def __init__(
):
super().__init__(config=config, workflow=workflow)
self.root_dir: str = config.taxprofiler.root
self.workflow_bin_path: str = config.taxprofiler.workflow_bin_path
self.profile: str = config.taxprofiler.profile
self.conda_env: str = config.taxprofiler.conda_env
self.conda_binary: str = config.taxprofiler.conda_binary
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1 change: 0 additions & 1 deletion cg/models/cg_config.py
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Expand Up @@ -314,7 +314,6 @@ class TaxprofilerConfig(CommonAppConfig):
params: str
config: str
resources: str
workflow_bin_path: str
pre_run_script: str = ""
profile: str
repository: str
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1 change: 0 additions & 1 deletion tests/conftest.py
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Expand Up @@ -2246,7 +2246,6 @@ def context_config(
"config": str(nf_analysis_pipeline_config_path),
"resources": str(nf_analysis_pipeline_resource_optimisation_path),
"launch_directory": Path("path", "to", "launchdir").as_posix(),
"workflow_bin_path": Path("workflow", "path").as_posix(),
"pre_run_script": "",
"profile": "myprofile",
"repository": "https://some_url",
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1 change: 0 additions & 1 deletion tests/fixture_plugins/analysis_starter/pipeline_config_fixtures.py
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Expand Up @@ -48,7 +48,6 @@ def _make_dict(workflow: str) -> dict:
"config": str(nf_analysis_pipeline_config_path),
"resources": str(nf_analysis_pipeline_resource_optimisation_path),
"launch_directory": Path("path", "to", "launchdir").as_posix(),
"workflow_bin_path": Path("workflow", "path").as_posix(),
"profile": "myprofile",
"references": Path("path", "to", "references").as_posix(),
"repository": nextflow_repository,
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