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Set io_type in MPAS streams based on PIO_TYPENAME from the CIME settings #7502

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Merged
jonbob merged 4 commits into from
Sep 16, 2025
Merged

Set io_type in MPAS streams based on PIO_TYPENAME from the CIME settings #7502

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cc8bf5d
Set io_type in MPAS streams based on the CIME settings
dqwu Jul 10, 2025
7f85a01
Handle ADIOS mesh I/O types in MPAS framework
dqwu Jul 11, 2025
fa61a1d
Use CDF-5 format for pnetcdf via PIO_NETCDF_FORMAT in MPAS streams
dqwu Jul 13, 2025
e73d967
Extend this to include MALI streams
jonbob Sep 4, 2025
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72 changes: 14 additions & 58 deletions components/mpas-ocean/cime_config/buildnml
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Original file line number Diff line number Diff line change
Expand Up @@ -568,21 +568,13 @@ def buildnml(case, caseroot, compname):
lines.append('')
lines.append('<immutable_stream name="mesh"')
lines.append(' type="none"')
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("FRIS") \
or ocn_grid.startswith("RRSwISC6"):
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lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
lines.append(' io_type="{}"'.format(ocn_pio_typename))

lines.append(' filename_template="{}/ocn/mpas-o/{}/{}.{}.nc"'.format(din_loc_root, ocn_mask, ic_prefix, ic_date))
lines.append('/>')
lines.append('<immutable_stream name="input"')
lines.append(' type="input"')
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("FRIS") \
or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
lines.append(' io_type="{}"'.format(ocn_pio_typename))

lines.append(' input_interval="initial_only"')
lines.append(' filename_template="{}"'.format(input_file))
Expand All @@ -600,11 +592,7 @@ def buildnml(case, caseroot, compname):
lines.append('-->')
lines.append('<immutable_stream name="restart"')
lines.append(' type="input;output"')
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("FRIS") \
or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
lines.append(' io_type="{}"'.format(ocn_pio_typename))

lines.append(' filename_template="{}.mpaso{}.rst.$Y-$M-$D_$S.nc"'.format(casename, inst_string))
lines.append(' filename_interval="output_interval"')
Expand All @@ -620,11 +608,7 @@ def buildnml(case, caseroot, compname):
lines.append('')
lines.append('<stream name="output"')
lines.append(' type="output"')
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("FRIS") \
or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
lines.append(' io_type="{}"'.format(ocn_pio_typename))

lines.append(' filename_template="{}.mpaso{}.hist.$Y-$M-$D_$S.nc"'.format(casename, inst_string))
lines.append(' filename_interval="00-01-00_00:00:00"')
Expand Down Expand Up @@ -809,7 +793,7 @@ def buildnml(case, caseroot, compname):
lines.append('')
lines.append('<stream name="globalStatsOutput"')
lines.append(' type="output"')
lines.append(' io_type="netcdf"')
lines.append(' io_type="{}"'.format(ocn_pio_typename))
lines.append(' filename_template="{}.mpaso{}.hist.am.globalStats.$Y-$M-$D.nc"'.format(casename, inst_string))
lines.append(' filename_interval="00-01-00_00:00:00"')
lines.append(' reference_time="01-01-01_00:00:00"')
Expand All @@ -835,7 +819,7 @@ def buildnml(case, caseroot, compname):
lines.append('')
lines.append('<stream name="surfaceAreaWeightedAveragesOutput"')
lines.append(' type="output"')
lines.append(' io_type="netcdf"')
lines.append(' io_type="{}"'.format(ocn_pio_typename))
lines.append(' filename_template="{}.mpaso{}.hist.am.surfaceAreaWeightedAverages.$Y-$M-$D.nc"'.format(casename, inst_string))
lines.append(' filename_interval="00-01-00_00:00:00"')
lines.append(' reference_time="01-01-01_00:00:00"')
Expand Down Expand Up @@ -932,11 +916,7 @@ def buildnml(case, caseroot, compname):
lines.append('<stream name="eddyProductVariablesOutput"')
lines.append(' type="output"')
lines.append(' precision="single"')
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("FRIS") \
or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
lines.append(' io_type="{}"'.format(ocn_pio_typename))

lines.append(' filename_template="{}.mpaso{}.hist.am.eddyProductVariables.$Y-$M-$D.nc"'.format(casename, inst_string))
lines.append(' filename_interval="00-01-00_00:00:00"')
Expand Down Expand Up @@ -1012,7 +992,7 @@ def buildnml(case, caseroot, compname):
lines.append('<stream name="waveOutput"')
lines.append(' type="output"')
lines.append(' precision="single"')
lines.append(' io_type="pnetcdf"')
lines.append(' io_type="{}"'.format(ocn_pio_typename))
lines.append(' filename_template="{}.mpaso{}.waveOutput.$Y-$M-$D_$h.$m.$s.nc"'.format(casename, inst_string))
lines.append(' filename_interval="00-01-00_00:00:00"')
lines.append(' reference_time="01-01-01_00:00:00"')
Expand Down Expand Up @@ -1318,11 +1298,7 @@ def buildnml(case, caseroot, compname):
lines.append('<stream name="timeSeriesStatsMonthlyOutput"')
lines.append(' type="output"')
lines.append(' precision="single"')
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("FRIS") \
or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
lines.append(' io_type="{}"'.format(ocn_pio_typename))

lines.append(' useMissingValMask="true"')
lines.append(' filename_template="{}.mpaso{}.hist.am.timeSeriesStatsMonthly.$Y-$M-$D.nc"'.format(casename, inst_string))
Expand Down Expand Up @@ -1554,11 +1530,7 @@ def buildnml(case, caseroot, compname):
lines.append('<stream name="timeSeriesStatsMonthlyMaxOutput"')
lines.append(' type="output"')
lines.append(' precision="single"')
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("FRIS") \
or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
lines.append(' io_type="{}"'.format(ocn_pio_typename))

lines.append(' useMissingValMask="true"')
lines.append(' filename_template="{}.mpaso{}.hist.am.timeSeriesStatsMonthlyMax.$Y-$M-$D.nc"'.format(casename, inst_string))
Expand Down Expand Up @@ -1620,11 +1592,7 @@ def buildnml(case, caseroot, compname):
lines.append('<stream name="timeSeriesStatsMonthlyMinOutput"')
lines.append(' type="output"')
lines.append(' precision="single"')
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("FRIS") \
or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
lines.append(' io_type="{}"'.format(ocn_pio_typename))

lines.append(' useMissingValMask="true"')
lines.append(' filename_template="{}.mpaso{}.hist.am.timeSeriesStatsMonthlyMin.$Y-$M-$D.nc"'.format(casename, inst_string))
Expand Down Expand Up @@ -1727,11 +1695,7 @@ def buildnml(case, caseroot, compname):
lines.append('')
lines.append('<stream name="timeSeriesStatsMonthlyRestart"')
lines.append(' type="input;output"')
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("FRIS") \
or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
lines.append(' io_type="{}"'.format(ocn_pio_typename))

lines.append(' filename_template="{}.mpaso{}.rst.am.timeSeriesStatsMonthly.$Y-$M-$D_$S.nc"'.format(casename, inst_string))
lines.append(' filename_interval="output_interval"')
Expand All @@ -1744,11 +1708,7 @@ def buildnml(case, caseroot, compname):
lines.append('')
lines.append('<stream name="timeSeriesStatsMonthlyMaxRestart"')
lines.append(' type="input;output"')
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("FRIS") \
or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
lines.append(' io_type="{}"'.format(ocn_pio_typename))

lines.append(' filename_template="{}.mpaso{}.rst.am.timeSeriesStatsMonthlyMax.$Y-$M-$D_$S.nc"'.format(casename, inst_string))
lines.append(' filename_interval="output_interval"')
Expand All @@ -1761,11 +1721,7 @@ def buildnml(case, caseroot, compname):
lines.append('')
lines.append('<stream name="timeSeriesStatsMonthlyMinRestart"')
lines.append(' type="input;output"')
if ocn_grid.startswith("oRRS1") or ocn_grid.startswith("FRIS") \
or ocn_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ocn_pio_typename))
lines.append(' io_type="{}"'.format(ocn_pio_typename))

lines.append(' filename_template="{}.mpaso{}.rst.am.timeSeriesStatsMonthlyMin.$Y-$M-$D_$S.nc"'.format(casename, inst_string))
lines.append(' filename_interval="output_interval"')
Expand Down
26 changes: 5 additions & 21 deletions components/mpas-seaice/cime_config/buildnml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -487,21 +487,13 @@ def buildnml(case, caseroot, compname):
lines.append('<streams>')
lines.append('<immutable_stream name="mesh"')
lines.append(' type="none"')
if ice_grid.startswith("oRRS1") or ice_grid.startswith("FRIS") \
or ice_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ice_pio_typename))
lines.append(' io_type="{}"'.format(ice_pio_typename))

lines.append(' filename_template="mesh_variables.nc" />')
lines.append('')
lines.append('<immutable_stream name="input"')
lines.append(' type="input"')
if ice_grid.startswith("oRRS1") or ice_grid.startswith("FRIS") \
or ice_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ice_pio_typename))
lines.append(' io_type="{}"'.format(ice_pio_typename))

lines.append(' filename_interval="none"')
lines.append(' filename_template="{}"'.format(input_file))
Expand All @@ -520,11 +512,7 @@ def buildnml(case, caseroot, compname):
lines.append('')
lines.append('<immutable_stream name="restart"')
lines.append(' type="input;output"')
if ice_grid.startswith("oRRS1") or ice_grid.startswith("FRIS") \
or ice_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ice_pio_typename))
lines.append(' io_type="{}"'.format(ice_pio_typename))

lines.append(' filename_template="{}.mpassi{}.rst.$Y-$M-$D_$S.nc"'.format(casename, inst_string))
lines.append(' filename_interval="output_interval"')
Expand All @@ -537,11 +525,7 @@ def buildnml(case, caseroot, compname):
if ice_ic_mode == 'spunup':
lines.append('<immutable_stream name="restart_ic"')
lines.append(' type="input"')
if ice_grid.startswith("oRRS1") or ice_grid.startswith("FRIS") \
or ice_grid.startswith("RRSwISC6"):
lines.append(' io_type="pnetcdf,cdf5"')
else:
lines.append(' io_type="{}"'.format(ice_pio_typename))
lines.append(' io_type="{}"'.format(ice_pio_typename))

lines.append(' filename_template="{}"'.format(input_file))
lines.append(' filename_interval="none"')
Expand Down Expand Up @@ -1005,7 +989,7 @@ def buildnml(case, caseroot, compname):

lines.append('<stream name="pointwiseStatsOutput"')
lines.append(' type="output"')
lines.append(' io_type="netcdf"')
lines.append(' io_type="{}"'.format(ice_pio_typename))
lines.append(' filename_template="pointwiseStats.$Y-$M-$D.nc"')
lines.append(' filename_interval="00-01-00_00:00:00"')
lines.append(' reference_time="01-01-01_00:00:00"')
Expand Down