error message needing help

[elffairy90]

Hi,

Could I run my code like this? Do you see any problems? I mean for the weights_path, could it be my own big.wig of a clean sample? But, when I ran this, i ran into this following problem. I'm new to dry lab, I would really appreciate your help! Thank you!

atacworks denoise
--noisybw /data/jwang/files_atacworks/test/control_R1.mLb.clN.bigWig
--genome /data/jwang/AtacWorks/data/reference/mm10.auto.sizes
--weights_path /data/jwang/files_atacworks/training/atacworks/control_R1.mLb.clN.bigWig
--out_home "./"
--exp_name "atacworks_denoise"
--distributed
--num_workers 0

INFO:2021-07-18 10:57:51,501:AtacWorks-intervals] Generating intervals tiling across all chromosomes in sizes file: /data/jwang/AtacWorks/data/reference/mm10.auto.sizes
INFO:2021-07-18 10:57:51,598:AtacWorks-intervals] Done!
Traceback (most recent call last):
File "/usr/local/share/virtualenvs/env37/bin/atacworks", line 8, in
sys.exit(main())
File "/usr/local/share/virtualenvs/env37/lib/python3.7/site-packages/scripts/main.py", line 487, in main
extension=".bw")
File "/usr/local/share/virtualenvs/env37/lib/python3.7/site-packages/atacworks/dl4atac/utils.py", line 235, in gather_files_from_cmdline
assert path.endswith(extension)
AssertionError

[avantikalal]

HI @elffairy90. --weights_path should be not a bigwig file but the path to a trained AtacWorks model. You can either train a model yourself using clean and noisy bigwig files (see tutorial 1) or else download one of our trained models. We recommend training a model if you have data available.