Issues

• rapidgenomics_cuda11.5.yml was wrong , and i fix some versions 冲突的内容太多了 不改装好后跑不起来

  NVIDIA-Genomics-Research/rapids-single-cell-examples#122 · Filter by author RaInSLc opened on Feb 8, 2025

• Leiden CLustering takes too long

  NVIDIA-Genomics-Research/rapids-single-cell-examples#121 · Filter by author siddharthamantrala opened on Aug 22, 2024

• weird UMAP results and very inconsistent with CPU results

  NVIDIA-Genomics-Research/rapids-single-cell-examples#120 · Filter by author yubin-ai opened on Feb 1, 2024
  1

• cell number limit: data point for 10M and 70M dataset

  NVIDIA-Genomics-Research/rapids-single-cell-examples#119 · Filter by author yubin-ai opened on Sep 24, 2023

• gpu memory issue - 8M cell 24G GPU out of memory during umap

  NVIDIA-Genomics-Research/rapids-single-cell-examples#118 · Filter by author yubin-ai opened on Sep 12, 2023
  1

• change of cuml library

  NVIDIA-Genomics-Research/rapids-single-cell-examples#117 · Filter by author yubin-ai opened on Sep 12, 2023

• ImportError: /usr/lib/x86_64-linux-gnu/libcuda.so.1: file too short

  NVIDIA-Genomics-Research/rapids-single-cell-examples#115 · Filter by author hyjforesight opened on Jun 15, 2023
  1

• fix rapids_scanpy_funcs.highly_variable_genes

  NVIDIA-Genomics-Research/rapids-single-cell-examples#111 · Filter by author hw-ju opened on Feb 11, 2023

• can't run inference with atacworks pretrained model within the container on A100

  NVIDIA-Genomics-Research/rapids-single-cell-examples#110 · Filter by author hw-ju opened on Feb 10, 2023

• jupyter notebooks difference between in the repo and within docker container

  NVIDIA-Genomics-Research/rapids-single-cell-examples#109 · Filter by author hw-ju opened on Feb 9, 2023

• TypeError: rank_genes_groups() got multiple values for argument 'groups'

  NVIDIA-Genomics-Research/rapids-single-cell-examples#108 · Filter by author archieandrews10 opened on Jan 21, 2023

• Cannot open UCX library: (null) in PCA analysis of 1M_brain_gpu_analysis_multigpu

  NVIDIA-Genomics-Research/rapids-single-cell-examples#103 · Filter by author ChenPeizhan opened on Nov 12, 2022
  3

• error of read_with_filter function

  NVIDIA-Genomics-Research/rapids-single-cell-examples#102 · Filter by author 111kakaluote opened on Oct 19, 2022

• The results consistency of RAPIDS implementation

  NVIDIA-Genomics-Research/rapids-single-cell-examples#101 · Filter by author 111kakaluote opened on Oct 14, 2022

• RuntimeError: exception occured! when analysis using multigpu

  NVIDIA-Genomics-Research/rapids-single-cell-examples#100 · Filter by author 111kakaluote opened on Sep 26, 2022
  2

• error in rapids_scanpy_funcs.highly_variable_genes

  bug
  NVIDIA-Genomics-Research/rapids-single-cell-examples#97 · Filter by author Wulin-Tan opened on Aug 20, 2022
  5

• Residual GPU Memory usage

  NVIDIA-Genomics-Research/rapids-single-cell-examples#96 · Filter by author r614 opened on Aug 19, 2022
  3

• Getting a scalar from an IntervalIndex is not yet supported

  NVIDIA-Genomics-Research/rapids-single-cell-examples#95 · Filter by author animesh opened on Aug 4, 2022

• csr_matrix with the .get method will return "Last value of index pointer should be less than the size of index and data arrays"

  NVIDIA-Genomics-Research/rapids-single-cell-examples#94 · Filter by author linmuchuiyang opened on Jun 16, 2022
  3

• conda import environment not working

  NVIDIA-Genomics-Research/rapids-single-cell-examples#93 · Filter by author tnnandi opened on Jun 12, 2022
  1

• rapids for pyscenic

  NVIDIA-Genomics-Research/rapids-single-cell-examples#89 · Filter by author Wulin-Tan opened on Apr 7, 2022

• Nearest neighbors graph computation crashes

  bug
  NVIDIA-Genomics-Research/rapids-single-cell-examples#72 · Filter by author manock opened on Mar 29, 2021
  1

  

• [BUG] Many of cuML's models that use cublas/cusolver/cusparse are limited in the number of cells that can be processed

  NVIDIA-Genomics-Research/rapids-single-cell-examples#54 · Filter by author cjnolet opened on Nov 12, 2020

• [FEA] Add batching option to filter_cells and filter_genes in rapids_scanpy_funcs

  enhancement
  NVIDIA-Genomics-Research/rapids-single-cell-examples#53 · Filter by author cjnolet opened on Nov 12, 2020

• OverflowError: value too large to convert to int

  NVIDIA-Genomics-Research/rapids-single-cell-examples#50 · Filter by author slowkow opened on Nov 2, 2020
  2