Issues

• SAVEPOINTS is not a valid parameter

  POVME/POVME3#55 · Filter by author GuseynovAD opened on May 28, 2026
  1

• Unable to run povme on my pdb

  POVME/POVME3#54 · Filter by author Jahan-I opened on Feb 3, 2025

• IndexError: index 0 is out of bounds for axis 0 with sieze o

  POVME/POVME3#53 · Filter by author zhouliqing0516 opened on May 18, 2024

• How to increase the deault size of 3 Armstrong in POVME3

  POVME/POVME3#52 · Filter by author obasekigit opened on Feb 26, 2024

• POVME doesn't work with smal GridSpacings and large radii: numpy.core._exceptions._ArrayMemoryError

  POVME/POVME3#51 · Filter by author thalesdovm opened on Jul 27, 2023

• no results got after run "python ../analyzeClusterMembershipInGroups.py"

  POVME/POVME3#50 · Filter by author yangkimm opened on Nov 13, 2022

• How to choose the center of inclusion sphere?

  POVME/POVME3#49 · Filter by author TianmingQu opened on Oct 19, 2022
  2

• Many common questions have been answered in "closed" issues!

  POVME/POVME3#48 · Filter by author j-wags opened on Oct 2, 2022

• Error on using POVME3

  POVME/POVME3#43 · Filter by author TianmingQu opened on Dec 14, 2021
  3

• Update POVME3 to Python3

  enhancementhelp wanted
  POVME/POVME3#33 · Filter by author Seanny123 opened on Dec 13, 2019
  6

• generic temporary work folder causing overwriting issues

  enhancementhelp wanted
  POVME/POVME3#28 · Filter by author rhs2132 opened on Sep 28, 2017
  1

• Make clustering include outputs like g_cluster

  enhancementhelp wanted
  POVME/POVME3#25 · Filter by author j-wags opened on Nov 14, 2016

• Change analyzeclustermembershipingroups to show frames starting at 1 instead of 0

  enhancementhelp wanted
  POVME/POVME3#23 · Filter by author j-wags opened on Oct 31, 2016

• Change inclusion cylinder to be defined as (base1x, b1y, b1z, b2x, b2y, b2z, radius)

  enhancementhelp wanted
  POVME/POVME3#22 · Filter by author j-wags opened on Oct 28, 2016

• Make workflow work with ~10 frames from trajectory to show example before running for real

  enhancementhelp wanted
  POVME/POVME3#21 · Filter by author j-wags opened on Sep 24, 2016

• Take care of numpy warning once and for all

  enhancementhelp wanted
  POVME/POVME3#20 · Filter by author j-wags opened on Aug 29, 2016

• Feature color normalization causes intensities to stack up at the edge of the box

  enhancementhelp wanted
  POVME/POVME3#19 · Filter by author j-wags opened on Aug 20, 2016

• Surface area varies a lot when I change grid resolution, even though volume stays about the same

  enhancementhelp wanted
  POVME/POVME3#18 · Filter by author j-wags opened on Aug 20, 2016

• Add option to binding_site_overlap to output raw score matrix

  enhancementhelp wanted
  POVME/POVME3#17 · Filter by author j-wags opened on Aug 7, 2016

• When loading an inclusion/seed region ensure that new points are snapped to a grid of appropriate resolution

  enhancementhelp wanted
  POVME/POVME3#16 · Filter by author j-wags opened on Aug 6, 2016

• Make POVME work with DNA pockets

  enhancementhelp wanted
  POVME/POVME3#15 · Filter by author j-wags opened on Aug 5, 2016

• Check for appropriate protonation so coloring doesn't break/we can do charge

  enhancementhelp wanted
  POVME/POVME3#14 · Filter by author j-wags opened on Aug 4, 2016

• Fix inclusion cylinder and cube, and VMD plugin as it relates to them

  enhancementhelp wanted
  POVME/POVME3#11 · Filter by author j-wags opened on Jul 8, 2016

• Make all subpackage integration tests be run in tests.sh

  enhancementhelp wanted
  POVME/POVME3#8 · Filter by author j-wags opened on Jul 8, 2016
  

• Make .vmdrc file creator

  enhancementhelp wanted
  POVME/POVME3#7 · Filter by author j-wags opened on Jul 8, 2016