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SWC Advanced Microscopy Facility

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https://swcmicroscopy.com/

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README.md

SWC Advanced Microscopy Facility

This is the GitHub org for the SWC Advanced Microscopy Facility, UCL.

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MATLAB_DAQmx_examples MATLAB_DAQmx_examples Public

DAQmx Examples using MATLAB

MATLAB 31 12
multiphoton-qc multiphoton-qc Public

Multi-photon quality control tools

MATLAB 38 7
StitchIt StitchIt Public

Stitching of large tiled datasets

MATLAB 23 8
Python_DAQmx_examples Python_DAQmx_examples Public

DAQmx Examples using Python with NI's nidaqmx package

Python 15 4
BakingTray BakingTray Public

Serial-section automated anatomy extension for ScanImage

MATLAB 18 5
SimpleMScanner SimpleMScanner Public

Simple MATLAB scanning software for demo purposes

MATLAB 6 2

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Showing 10 of 32 repositories

brainsaw_channel_chooser Public
Choose correct excitation wavelength and emission channels for BrainSaw

SWC-Advanced-Microscopy/brainsaw_channel_chooser's past year of commit activity

JavaScript 0 0 0 0 Updated Aug 9, 2026
swc-advanced-microscopy.github.io Public
facility webpage

SWC-Advanced-Microscopy/swc-advanced-microscopy.github.io's past year of commit activity

HTML 0 0 0 0 Updated Aug 9, 2026
multiphoton-qc Public
Multi-photon quality control tools

SWC-Advanced-Microscopy/multiphoton-qc's past year of commit activity

MATLAB 38 LGPL-3.0 7 52 0 Updated Aug 8, 2026
electronics_basics Public

SWC-Advanced-Microscopy/electronics_basics's past year of commit activity

0 0 0 0 Updated Aug 7, 2026
BakingTray Public
Serial-section automated anatomy extension for ScanImage

SWC-Advanced-Microscopy/BakingTray's past year of commit activity

MATLAB 18 LGPL-3.0 5 158 0 Updated Aug 7, 2026
Brainsaw_CAD Public
CAD models for key BrainSaw parts

SWC-Advanced-Microscopy/Brainsaw_CAD's past year of commit activity

0 MIT 0 0 0 Updated Aug 6, 2026
.github Public
prettifier for AMF org GitHub

SWC-Advanced-Microscopy/.github's past year of commit activity

0 0 0 0 Updated Aug 4, 2026
2p_crosssection_viewer Public
Webpage with interactive plot of commonly used 2p dye cross-sections

SWC-Advanced-Microscopy/2p_crosssection_viewer's past year of commit activity

HTML 1 Apache-2.0 0 0 0 Updated Aug 4, 2026
scanimage_zstack_tools Public
Record high quality in vivo z stacks and assemble them using image registration after acquisition

SWC-Advanced-Microscopy/scanimage_zstack_tools's past year of commit activity

MATLAB 0 LGPL-2.1 0 0 0 Updated Jul 31, 2026
StitchIt Public
Stitching of large tiled datasets

SWC-Advanced-Microscopy/StitchIt's past year of commit activity

MATLAB 23 LGPL-3.0 8 73 1 Updated Jul 8, 2026

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