TRON Bioinformatics
- 82 followers
- Mainz, Germany
- http://tron-mainz.de/
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tronflow-mutect2
tronflow-mutect2 PublicNextflow pipeline for Mutect2 somatic variant calling best practices
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covigator-ngs-pipeline
covigator-ngs-pipeline PublicA Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
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splice2neo
splice2neo PublicR package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes
Repositories
- oblx Public
Reproducible generation of references and resources for next generation sequencing pipelines.
TRON-Bioinformatics/oblx’s past year of commit activity - security Public
This project hosts security advisories and their accompanying tutorials and instructions
TRON-Bioinformatics/security’s past year of commit activity - splice2neo Public
R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes
TRON-Bioinformatics/splice2neo’s past year of commit activity - qcpanda Public
TRON-Bioinformatics/qcpanda is a Nextflow (DSL2) pipeline that runs a comprehensive battery of QC tools — SeqKit, FastQC, Sequali, fastp, SortMeRNA, FastQ Screen, Kraken2/Bracken, and NGSCheckMate — on paired-end or single-end FASTQ data and aggregates all results into a single interactive MultiQC report.
TRON-Bioinformatics/qcpanda’s past year of commit activity - bioconda-recipes Public Forked from bioconda/bioconda-recipes
Conda recipes for the bioconda channel.
TRON-Bioinformatics/bioconda-recipes’s past year of commit activity - test-datasets Public Forked from nf-core/test-datasets
Test data to be used for automated testing with the nf-core pipelines
TRON-Bioinformatics/test-datasets’s past year of commit activity - snakemake Public Forked from snakemake/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
TRON-Bioinformatics/snakemake’s past year of commit activity - snakemake-wrappers Public Forked from snakemake/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
TRON-Bioinformatics/snakemake-wrappers’s past year of commit activity
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