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UPHL-BioNGS
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nf-core pipeline linting
nf-core pipeline linting
Test ARTIC TOOLS primer schema validation workflow
Test ARTIC TOOLS primer schema validation workflow
Test MPX primers
Test MPX primers
Test mpx workflow
Test mpx workflow
Test mpx workflow with idt primers
Test mpx workflow with idt primers
Test mpx workflow with primalseq primers
Test mpx workflow with primalseq primers
Test mpx workflow with yale primers
Test mpx workflow with yale primers
Test params file generation
Test params file generation
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MPX with IDT Primers
Test mpx workflow with idt primers
#316:
Pull request
#608
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16m 47s
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Test SARS-CoV-2 workflow
Test SARS-CoV-2 workflow
#369:
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30m 27s
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Download wastewater fastq
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#310:
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29m 49s
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Profile 2
Test SARS-CoV-2 profile 2 workflow
#346:
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22m 49s
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22m 49s
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nanopore
Test SARS-CoV-2 nanopore workflow
#291:
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7m 53s
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Test profile
Test SARS-CoV-2 with Kraken2
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22m 10s
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#66:
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55s
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mpx_primalseq
Test mpx workflow with primalseq primers
#316:
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7m 30s
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primers
Test SARS-CoV-2 primers
#281:
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33m 4s
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nanopore
Test ARTIC TOOLS primer schema validation workflow
#71:
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8m 52s
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mpx_yale
Test mpx workflow with yale primers
#215:
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8m 51s
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MPX
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8m 21s
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Profile 3
Test SARS-CoV-2 profile 2 workflow
#194:
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3m 55s
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CI test run
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19m 42s
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Validate schema
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Download fastq and fasta and run
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18m 29s
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Profile 1
Test SARS-CoV-2 profile 1 workflow
#346:
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24m 9s
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Test MSA
Test SARS-CoV-2 msa workflow
#347:
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5m 54s
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5m 54s
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Update dataset
Test params file generation
#66:
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Test profile
Test SARS-CoV-2 profile workflow
#349:
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16m 1s
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Test profile
Test SARS-CoV-2 profile workflow with latest images
#145:
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9m 47s
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primers
Test MPX primers
#16:
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39m 15s
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update nextclade dataset
update nextclade dataset
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Check versions
Check versions
#218:
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Fix typos in the documentation
Test SARS-CoV-2 primers
#280:
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