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Initial code review of changes for hg38 alt contigs - #63

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rnpandya wants to merge 20 commits into
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rnpandya:alts
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Initial code review of changes for hg38 alt contigs#63
rnpandya wants to merge 20 commits into
amplab:devfrom
rnpandya:alts

Fix rc sort, non-large alt index build

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