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Allison/debugging#194

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allison-li-1016 wants to merge 2 commits into
allison/carcade-refactor-treatfrom
allison/debugging
Draft

Allison/debugging#194
allison-li-1016 wants to merge 2 commits into
allison/carcade-refactor-treatfrom
allison/debugging

adding edge cases for t-cells

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GitHub Actions / checkstyle completed Jul 17, 2025 in 0s

reviewdog [checkstyle] report

reported by reviewdog 🐶

Findings (12)

src/arcade/potts/sim/PottsSeries.java|215 col 15| Comment matches to-do format 'TODO:'.
src/arcade/potts/vis/PottsVisualization.java|174 col 5| Method create3DDrawers length is 277 lines (max allowed is 150).
src/arcade/core/gui/GUI.java|374 col 5| Class XMLFileFilter should be declared as final.
src/arcade/patch/sim/output/PatchOutputSerializer.java|158 col 15| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/module/PatchModuleProliferation.java|140 col 23| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/module/PatchModuleMigration.java|62 col 23| Comment matches to-do format 'TODO:'.
src/arcade/patch/agent/cell/PatchCellCART.java|59 col 16| Variable 'selfReceptors' must be private and have accessor methods.
src/arcade/patch/agent/cell/PatchCellCART.java|65 col 16| Variable 'boundCARAntigensCount' must be private and have accessor methods.
src/arcade/patch/agent/cell/PatchCellCART.java|68 col 16| Variable 'boundSelfAntigensCount' must be private and have accessor methods.
src/arcade/patch/agent/cell/PatchCellCART.java|267 col 45| 'activated' hides a field.
test/arcade/potts/sim/Potts3DTest.java|1| File length is 2,371 lines (max allowed is 2,000).
test/arcade/potts/sim/Potts3DTest.java|211 col 18| ';' is followed by whitespace.

Filtered Findings (0)

Annotations

Check failure on line 215 in src/arcade/potts/sim/PottsSeries.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/potts/sim/PottsSeries.java#L215 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>

Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/potts/sim/PottsSeries.java:215:15: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)

Check failure on line 174 in src/arcade/potts/vis/PottsVisualization.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/potts/vis/PottsVisualization.java#L174 <com.puppycrawl.tools.checkstyle.checks.sizes.MethodLengthCheck>

Method create3DDrawers length is 277 lines (max allowed is 150).
Raw output
/github/workspace/./src/arcade/potts/vis/PottsVisualization.java:174:5: error: Method create3DDrawers length is 277 lines (max allowed is 150). (com.puppycrawl.tools.checkstyle.checks.sizes.MethodLengthCheck)

Check failure on line 374 in src/arcade/core/gui/GUI.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/core/gui/GUI.java#L374 <com.puppycrawl.tools.checkstyle.checks.design.FinalClassCheck>

Class XMLFileFilter should be declared as final.
Raw output
/github/workspace/./src/arcade/core/gui/GUI.java:374:5: error: Class XMLFileFilter should be declared as final. (com.puppycrawl.tools.checkstyle.checks.design.FinalClassCheck)

Check failure on line 158 in src/arcade/patch/sim/output/PatchOutputSerializer.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/sim/output/PatchOutputSerializer.java#L158 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>

Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/sim/output/PatchOutputSerializer.java:158:15: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)

Check failure on line 140 in src/arcade/patch/agent/module/PatchModuleProliferation.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/agent/module/PatchModuleProliferation.java#L140 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>

Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/module/PatchModuleProliferation.java:140:23: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)

Check failure on line 62 in src/arcade/patch/agent/module/PatchModuleMigration.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/agent/module/PatchModuleMigration.java#L62 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>

Comment matches to-do format 'TODO:'.
Raw output
/github/workspace/./src/arcade/patch/agent/module/PatchModuleMigration.java:62:23: error: Comment matches to-do format 'TODO:'. (com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck)

Check failure on line 59 in src/arcade/patch/agent/cell/PatchCellCART.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/agent/cell/PatchCellCART.java#L59 <com.puppycrawl.tools.checkstyle.checks.design.VisibilityModifierCheck>

Variable 'selfReceptors' must be private and have accessor methods.
Raw output
/github/workspace/./src/arcade/patch/agent/cell/PatchCellCART.java:59:16: error: Variable 'selfReceptors' must be private and have accessor methods. (com.puppycrawl.tools.checkstyle.checks.design.VisibilityModifierCheck)

Check failure on line 65 in src/arcade/patch/agent/cell/PatchCellCART.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/agent/cell/PatchCellCART.java#L65 <com.puppycrawl.tools.checkstyle.checks.design.VisibilityModifierCheck>

Variable 'boundCARAntigensCount' must be private and have accessor methods.
Raw output
/github/workspace/./src/arcade/patch/agent/cell/PatchCellCART.java:65:16: error: Variable 'boundCARAntigensCount' must be private and have accessor methods. (com.puppycrawl.tools.checkstyle.checks.design.VisibilityModifierCheck)

Check failure on line 68 in src/arcade/patch/agent/cell/PatchCellCART.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/agent/cell/PatchCellCART.java#L68 <com.puppycrawl.tools.checkstyle.checks.design.VisibilityModifierCheck>

Variable 'boundSelfAntigensCount' must be private and have accessor methods.
Raw output
/github/workspace/./src/arcade/patch/agent/cell/PatchCellCART.java:68:16: error: Variable 'boundSelfAntigensCount' must be private and have accessor methods. (com.puppycrawl.tools.checkstyle.checks.design.VisibilityModifierCheck)

Check failure on line 267 in src/arcade/patch/agent/cell/PatchCellCART.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] src/arcade/patch/agent/cell/PatchCellCART.java#L267 <com.puppycrawl.tools.checkstyle.checks.coding.HiddenFieldCheck>

'activated' hides a field.
Raw output
/github/workspace/./src/arcade/patch/agent/cell/PatchCellCART.java:267:45: error: 'activated' hides a field. (com.puppycrawl.tools.checkstyle.checks.coding.HiddenFieldCheck)

Check failure on line 1 in test/arcade/potts/sim/Potts3DTest.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] test/arcade/potts/sim/Potts3DTest.java#L1 <com.puppycrawl.tools.checkstyle.checks.sizes.FileLengthCheck>

File length is 2,371 lines (max allowed is 2,000).
Raw output
/github/workspace/./test/arcade/potts/sim/Potts3DTest.java:1:0: error: File length is 2,371 lines (max allowed is 2,000). (com.puppycrawl.tools.checkstyle.checks.sizes.FileLengthCheck)

Check failure on line 211 in test/arcade/potts/sim/Potts3DTest.java

See this annotation in the file changed.

@github-actions github-actions / checkstyle

[checkstyle] test/arcade/potts/sim/Potts3DTest.java#L211 <com.puppycrawl.tools.checkstyle.checks.whitespace.EmptyForIteratorPadCheck>

';' is followed by whitespace.
Raw output
/github/workspace/./test/arcade/potts/sim/Potts3DTest.java:211:18: error: ';' is followed by whitespace. (com.puppycrawl.tools.checkstyle.checks.whitespace.EmptyForIteratorPadCheck)