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perf(vcf-to-proteindb): per-chromosome multiprocessing (~3.4× on 4-chrom test)
- #104
#104
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ypriverol
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May 14, 2026
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perf(vcf-to-proteindb): per-chromosome multiprocessing (~3.4× on 4-chrom test)
#104
ypriverol
merged 4 commits into
feat/bug-fixed-iteration
bigbio/pgatk:feat/bug-fixed-iteration
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perf/vcf-to-proteindb-parallel
bigbio/pgatk:perf/vcf-to-proteindb-parallel
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Commits on May 13, 2026
Add cProfile support to vcf-to-proteindb benchmark script
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Parallelise vcf-to-proteindb per chromosome via multiprocessing
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Tier-1 perf follow-ups: SeqIO.index_db, streamed VCF split, lazy id-mapping
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Revert non-deterministic test output; gitignore SeqIO.index_db files
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