Move to pyproject+uv

.github/workflows/main.yml

@@ -17,8 +17,7 @@ jobs:
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          pip install -e .
-          pip install pytest
+          pip install -e .[test]
 
       - name: Run tests
-        run: pytest -v pyvdrm/tests/
+        run: pytest -v

README.md

@@ -1,6 +1,4 @@
 # pyvdrm
-[![Build
-Status](https://travis-ci.org/cfe-lab/pyvdrm.svg?branch=master)](https://travis-ci.org/cfe-lab/pyvdrm)
 
 Tools for interpreting drug resistance mutations in viral amino acid sequences
 

pyproject.toml

@@ -0,0 +1,58 @@
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
+
+[project]
+name = "pyvdrm"
+version = "0.3.1"
+description = "Tools for interpreting drug resistance mutations in viral amino acid sequences"
+readme = "README.md"
+authors = [
+    { name = "British Columbia Centre for Excellence in HIV/AIDS", email = "vmysak@bccfe.ca" },
+]
+requires-python = ">=3.8,<3.15"
+dependencies = [
+    "pyparsing",
+]
+classifiers = [
+    "Development Status :: 5 - Production/Stable",
+    "Intended Audience :: Science/Research",
+    "Intended Audience :: Developers",
+    "Operating System :: OS Independent",
+    "Programming Language :: Python",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.8",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
+    "Programming Language :: Python :: 3.14",
+    "Programming Language :: Python :: Implementation :: CPython",
+    "Natural Language :: English",
+    "Topic :: Scientific/Engineering :: Bio-Informatics",
+    "Topic :: Software Development :: Libraries",
+]
+
+[project.optional-dependencies]
+test = [
+    # Dependencies required for running the test suite
+    "pytest>=6.0",
+]
+
+[project.urls]
+"Homepage" = "https://github.com/cfe-lab/pyvdrm"
+"Source" = "https://github.com/cfe-lab/pyvdrm"
+"Bug Tracker" = "https://github.com/cfe-lab/pyvdrm/issues"
+
+[tool.hatch.build.targets.sdist]
+include = ["pyvdrm"]
+
+[tool.hatch.build.targets.wheel]
+packages = ["pyvdrm"]
+
+[tool.pytest.ini_options]
+testpaths = ["pyvdrm/tests"]
+python_files = ["test_*.py"]
+python_classes = ["Test*"]
+python_functions = ["test_*"]