Ask screed to parse descriptions - #11
Open
humberto-ortiz wants to merge 2 commits into
Open
Conversation
The make-namedb.py script was not asking screed to parse descriptions, the resulting namedb file had empty descriptions for all transcripts.
It seems record names in screed changed format. In order for annotate-seqs.py to work with make-namedb.py I had to change how transcript names are parsed.
Author
|
The annotating transcript families in the eel pond mRNASeq protocol was failing, even when using the canned results. It seems transcript names are stored differently than the scripts expect. @josefinacmenendez and I spent some time tracking down some of the changes. |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
The make-namedb.py script was not asking screed to parse descriptions,
the resulting namedb files had empty descriptions for all transcripts.