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docs: preview modernized dj.Diagram style on the LC-MS pipeline #3

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248ab89
docs: regenerate pipeline diagram with modernized dj.Diagram style
dimitri-yatsenko Aug 10, 2026
101a3e9
docs: regenerate pipeline diagram — adaptive (auto) theme + sans sche…
dimitri-yatsenko Aug 10, 2026
9fe43bb
docs: update DataJoint version references to 2.3
dimitri-yatsenko Aug 10, 2026
303be06
docs: regenerate pipeline diagram with top-right schema labels
dimitri-yatsenko Aug 10, 2026
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6 changes: 3 additions & 3 deletions README.md
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A demonstration DataJoint pipeline for LC-MS (Liquid Chromatography-Mass Spectrometry) data processing.

This project showcases DataJoint 2.1 best practices with a realistic scientific workflow.
This project showcases DataJoint 2.3 best practices with a realistic scientific workflow.

## Pipeline Overview

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## Quick Start

### 1. Configure Database (DataJoint 2.1)
### 1. Configure Database (DataJoint 2.3)

DataJoint 2.1 uses a layered configuration system. Non-sensitive settings go in `datajoint.json`, while credentials come from secrets or environment variables.
DataJoint 2.3 uses a layered configuration system. Non-sensitive settings go in `datajoint.json`, while credentials come from secrets or environment variables.

**Configuration sources (in priority order):**
1. Environment variables (`DJ_HOST`, `DJ_USER`, `DJ_PASS`, etc.)
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