EBI Gene Expression Group
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anatomogram
anatomogram PublicAnatomogram illustrating Expression Atlas experiments
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container-galaxy-sc-tertiary
container-galaxy-sc-tertiary PublicGalaxy container for single cell RNA-Seq tertiary analysis tools
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r-seurat-scripts
r-seurat-scripts PublicScripts to install as a Bioconda package for making workflows
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scxa-workflows
scxa-workflows PublicHigher level repo for aggregating all of Atlas workflow logic for Single Cell
Repositories
- bulk-recalculations Public
Snakemake workflow for new experiments processing, reprocessing and recalculations steps
- atlas-k8s-ci-environment Public
Collection of Kubernetes manifests for CI of Expression Atlas web applications
- atlas-web-core Public
Business logic for single cell and bulk Expression Atlas and for the up-and-coming Expression Atlas API
- atlas-schemas Public
Schemas for the database and SolrCloud servers used by Expression Atlas and Single Cell Expression Atlas
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