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Update README.md for conda users #53

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20 changes: 20 additions & 0 deletions README.md
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Expand Up @@ -19,6 +19,14 @@ git clone https://github.com/emdann/milopy.git
cd milopy
pip install .
```
for conda users who have trouble installing with `pip install .` (An R instance needs to co-exist in the same environment).
```bash
conda install conda-forge::r-base
git clone https://github.com/emdann/milopy.git
cd milopy
pip install .
```


## Tutorial

Expand All @@ -31,6 +39,18 @@ pip install .
import scanpy as sc
import numpy as np

import milopy
import milopy.core as milo
```
for conda users (The R root needs to be explicitly called to the running .ipynb session).
```python
import scanpy as sc
import numpy as np

import os
import sys
os.environ['R_HOME'] = sys.prefix + "\\lib\\R"

import milopy
import milopy.core as milo
```
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