improved growth model fitting - #12

Merged

harmsm merged 24 commits into

harmslab:mainfrom

Jun 22, 2026

Commits on Jun 3, 2026

ux cleanup in simulation code
harmsm
committed
3cb11ea

Commits on Jun 6, 2026

ux cleanup in simulation
harmsm
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1ee4457

Commits on Jun 7, 2026

promoted geno trajectory plot out of calibration
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7fd6a97
cleanup ModelOrchestrator naming throughout codebase
harmsm
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be21b65

Commits on Jun 9, 2026

fixed prediction bugs
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ae34300
improved fit summary plotting
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42c5d50
added hill model perturbative simulation
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f34ac63
cleaned up summarize fit output
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f9483a0
improved simulate examples
harmsm
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f96a5b4

Commits on Jun 10, 2026

fixed bug that scrambled genotypes on growth prediction
harmsm
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8d1fec6

Commits on Jun 11, 2026

mid development of err calibration/quantilfe refactor
harmsm
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a60ca70

Commits on Jun 12, 2026

cleaning up summarize_fit_cli
harmsm
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58ebeb8

Commits on Jun 15, 2026

clean up summarize output
harmsm
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bf89215

Commits on Jun 16, 2026

various ui/ux/test cleanups
harmsm
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ee8a1d5
cleaning up test and cli naming
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b6d9c52
cleaned up some priors in growth
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b62dc8f
small plot change
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9a1dd9e
improved binding genotype simulation sampling
harmsm
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a408faa

Commits on Jun 19, 2026

working to fix theta undershoot in SVI
harmsm
committed
4e8dd54

Commits on Jun 22, 2026