Immcantation

enchantR provides additional quality control and reporting functions for other R packages in the Immcantation framework and is part of the magic behind nf-co.re/airrflow, a start-to-finish Nextflow pipeline to analyze AIRR-seq data.

IgPhyML is a phylogenetic inference package for B cell repertoires. It implements codon substitution models designed that incorporate unique features of somatic hypermutation and allow for parameter estimation across lineages to characterize entire repertoires.

Dowser is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). Dowser provides a set of tools for performing phylogenetic analysis on B cell receptor repertoires.

The Immcantation Portal

SCOPer is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). SCOPer provides a computational framework for the identification of B cell clonal relationships from Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data.

pRESTO is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). pRESTO is a bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

TIgGER is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides tools to infer the V genotype of an individual from immunoglobulin (Ig) repertoire sequencing data (AIRR-Seq, Rep-Seq).

Immcantation Users Meeting