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Achievement: Pull Sharkx3Achievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx3Achievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Organizations

@NBISweden @DINA-Web

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jmenglund/README.md

Hi, I'm Markus

ORCID LinkedIn

I am a Data Steward with experience in research data management, metadata strategy, data protection, and infrastructure for sensitive human data.

I work at NBIS, the bioinformatics platform within SciLifeLab, and I am employed by Uppsala University.

I help make research data more discoverable, reusable, and secure by building metadata-driven systems and supporting FAIR data practices.

What I work on 🚀

A few projects I am engaged in

Key strengths

  • Data governance and compliance for sensitive health data
  • Metadata modelling for interoperability and discovery
  • Secure, scalable infrastructure for research data
  • Python automation for reproducible workflows

Interests

  • Bioinformatics
  • Phylogenetics
  • Biodiversity informatics
  • Research data standards
  • Python automation

Contact

Pinned Loading

  1. pandas-charm pandas-charm Public

    Python library for getting character matrices (alignments) into and out of pandas

    Python

  2. predsim predsim Public

    Simulate predictive datasets from MrBayes' output

    Python 2

  3. pandas-validation pandas-validation Public

    A small Python library for validating data with pandas

    Python 21 1

  4. Naturhistoriska/extract_mysql_tables.py Naturhistoriska/extract_mysql_tables.py Public

    A simple command-line tool for exporting tables from a MySQL database to TSV-files

    Python

  5. Naturhistoriska/cardinality.py Naturhistoriska/cardinality.py Public

    Examine the cardinality of a relation between two datasets

    Python