Issues

• attempt to set an attribute on NULL

  katiesaund/hogwash#95 · Filter by author samuelbloomfield opened on Aug 8, 2024
  1

• Error with printing of the continuous test results

  katiesaund/hogwash#94 · Filter by author kylegontjes opened on Jul 10, 2024

• Error in matexpo(Q * EL[i]) : NA/NaN/Inf in foreign function call (arg 1)

  katiesaund/hogwash#92 · Filter by author U201412486 opened on Sep 9, 2022

• how and what should I do can transform vcf file to matrix file?

  katiesaund/hogwash#91 · Filter by author Albertzhuo123 opened on Aug 3, 2022

• gene-based analysis?

  katiesaund/hogwash#90 · Filter by author Shicheng-Guo opened on Mar 8, 2022

• How exactly does the p-value calculation work?

  katiesaund/hogwash#87 · Filter by author MikiSchikora opened on Dec 20, 2021
  5

• In format_tree(args$tree) : NAs introduced by coercion

  katiesaund/hogwash#86 · Filter by author jellyvanderwoude opened on Aug 26, 2021

• Add paragraph to wiki

  katiesaund/hogwash#85 · Filter by author katiesaund opened on Jun 20, 2021

• Tiered approach to p-values

  katiesaund/hogwash#83 · Filter by author katiesaund opened on Jun 20, 2021

• update DESCRIPTION

  katiesaund/hogwash#81 · Filter by author katiesaund opened on Apr 8, 2021

• Add check for contiguity

  enhancement
  katiesaund/hogwash#79 · Filter by author katiesaund opened on Apr 8, 2021

• Add stochastic mapping

  enhancement
  katiesaund/hogwash#78 · Filter by author katiesaund opened on Apr 8, 2021

• Share AR data

  enhancement
  katiesaund/hogwash#77 · Filter by author katiesaund opened on Oct 29, 2020

• Add option for maximum parsimony ancestral reconstruction

  enhancement
  katiesaund/hogwash#76 · Filter by author zenalapp opened on Oct 26, 2020

• Return raw delta(phenotype)

  enhancement
  katiesaund/hogwash#75 · Filter by author katiesaund opened on Oct 15, 2020

• Add phenotype/genotype to tree with phenotype/genotypes transitions in output pdf

  enhancement
  katiesaund/hogwash#74 · Filter by author zenalapp opened on Oct 9, 2020

• Add epsilon vs. p-value plot to the hogwash pdf output

  enhancement
  katiesaund/hogwash#73 · Filter by author zenalapp opened on Oct 2, 2020

• Return more objects

  enhancement
  katiesaund/hogwash#72 · Filter by author katiesaund opened on Sep 28, 2020
  1

• Add function to estimate run time

  enhancement
  katiesaund/hogwash#70 · Filter by author katiesaund opened on Sep 8, 2020

• Make faster/parallelize where possible

  enhancement
  katiesaund/hogwash#69 · Filter by author zenalapp opened on Sep 8, 2020
  1

• Implement intermediate data saves

  enhancement
  katiesaund/hogwash#61 · Filter by author katiesaund opened on Jul 4, 2020
  1

• Stop running binary tests if sum(beta(phenotype)) == 1

  enhancementgood first issue
  katiesaund/hogwash#59 · Filter by author katiesaund opened on Apr 28, 2020