Issues

• Not compatible with anndata v0.12+

  lilab-bcb/pegasus#323 · Filter by author yihming opened on Aug 12, 2025

• Potential Bug in Infer Doublets

  lilab-bcb/pegasus#313 · Filter by author hl-xue opened on Aug 16, 2024

• Buffer dtype mismatch when running de_analysis on AnnData object from scanpy (with testcase)

  lilab-bcb/pegasus#312 · Filter by author hvbakel opened on Jul 31, 2024

• How to Embed BBKNN Results into MultimodalData?

  lilab-bcb/pegasus#311 · Filter by author x1han opened on Jul 30, 2024

• Questions about installation of the version "infercnv"

  lilab-bcb/pegasus#310 · Filter by author Richard-D-Watson opened on Jul 18, 2024
  1

• Subset using a list of barcodes

  lilab-bcb/pegasus#273 · Filter by author yoavhadas opened on Jun 22, 2023
  4

• Error with pegasus.calc_kBET

  lilab-bcb/pegasus#271 · Filter by author hl-xue opened on May 31, 2023

• scTransform support

  lilab-bcb/pegasus#257 · Filter by author mikecuoco opened on Mar 15, 2023
  2

• on disk reading of a large h5ad file

  lilab-bcb/pegasus#254 · Filter by author hoondy opened on Nov 19, 2022

• Mismatch dtype for diff_expr.py

  lilab-bcb/pegasus#248 · Filter by author tsigalko2003 opened on Jun 8, 2022

• Cell cycle regress before run_scanorama?

  lilab-bcb/pegasus#227 · Filter by author Zifeng-L opened on Jan 6, 2022

• Could you add dendrogram into violinplot?

  lilab-bcb/pegasus#116 · Filter by author Zifeng-L opened on Oct 30, 2020