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Dependabot

.github/dependabot.yml

CI on: pull_request

mypy

pyright

test (python=3.9 biopython=1.80 numpy=latest)

test (python=3.9 biopython=1.82 numpy=latest)

test (python=3.9 biopython=1.85 numpy=latest)

test (python=3.10 biopython=1.80 numpy=latest)

test (python=3.10 biopython=1.82 numpy=latest)

test (python=3.10 biopython=1.85 numpy=latest)

test (python=3.10 biopython=latest numpy=latest)

test (python=3.11 biopython=1.80 numpy=latest)

test (python=3.11 biopython=1.82 numpy=latest)

test (python=3.11 biopython=1.85 numpy=latest)

test (python=3.11 biopython=latest numpy=latest)

test (python=3.12 biopython=1.82 numpy=latest)

test (python=3.12 biopython=1.85 numpy=latest)

test (python=3.12 biopython=latest numpy=latest)

test (python=3.13 biopython=1.85 numpy=latest)

test (python=3.13 biopython=latest numpy=latest)

test (python=3.10 biopython=1.80 numpy=1.26.4)

test (python=3.12 biopython=latest numpy=1.26.4)

pathogen-repo-ci (dengue)

pathogen-repo-ci (lassa)

pathogen-repo-ci (measles)

pathogen-repo-ci (mpox)

pathogen-repo-ci (mumps)

pathogen-repo-ci (oropouche)

pathogen-repo-ci (rabies)

pathogen-repo-ci (seasonal-cov)

pathogen-repo-ci (wnv)

pathogen-repo-ci (yellow-fever)

pathogen-repo-ci (zika)

pathogen-repo-ci-v0 (avian-flu)

pathogen-repo-ci-v0 (ncov)

pathogen-repo-ci-v0 (rsv)

pathogen-repo-ci-v0 (seasonal-flu)

pathogen-repo-ci-v0 (vcf-input-tutorial)

build-docs / build

check-docs

check-subsample-config-schema

codecov

release

rebuild-docker-image

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