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refine: warn if doing timetree and there's apparent mismatch between metadata and sequence ids#1902

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corneliusroemer wants to merge 7 commits into
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refine: warn if doing timetree and there's apparent mismatch between metadata and sequence ids#1902
corneliusroemer wants to merge 7 commits into
masterfrom
refine-warning

Fix CRAM test indentation for ID mismatch warning

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