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Merge branch 'master' into update-stringtie

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Graphite / mergeability_check

Run when nf-test tests are skipped on: pull_request

check-files

confirm-pass-nf-test

Run nf-test on: pull_request

nf-test-changes

x64 | conda | 1

x64 | docker | 1

x64 | singularity | 1

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x64 | conda | 15

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x64 | singularity | 15

x64 | conda | 16

x64 | docker | 16

x64 | singularity | 16

confirm-pass-nf-test

Run when nf-test-gpu tests are skipped on: pull_request

check-files

confirm-pass-gpu

labeler on: pull_request

Label the PR size

Run GPU nf-tests on: pull_request

nf-test-changes

GPU Test | g4dn.xlarge | ${{ matrix.profile }} | ${{ matrix.shard }}

GPU Test | g4dn.2xlarge | ${{ matrix.profile }} | ${{ matrix.shard }}

confirm-pass-gpu

Run Linting on: pull_request

pre-commit

nf-core-changes

nf-core lint modules (stringtie/merge)

nf-core lint modules (stringtie/stringtie)

nf-core lint subworkflows (bam_stringtie_merge)

confirm-pass-lint

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