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Add HDL h2 module#11970

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lyh970817 wants to merge 1 commit into
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lyh970817:modules/hdl-h2-create
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Add HDL h2 module#11970
lyh970817 wants to merge 1 commit into
nf-core:masterfrom
lyh970817:modules/hdl-h2-create

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HDL estimates SNP heritability and pairwise genetic correlation from GWAS summary statistics. This PR upstreams hdl/h2, which estimates SNP heritability from canonicalized GWAS summary statistics with an HDL LD reference panel.

The HDL fixtures used by these tests are available on the merged nf-core/test-datasets modules branch from nf-core/test-datasets#1932.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test hdl/h2 --profile docker
      • nf-core modules test hdl/h2 --profile singularity
      • nf-core modules test hdl/h2 --profile conda

@lyh970817 lyh970817 force-pushed the modules/hdl-h2-create branch from 74690ca to 9f7e111 Compare June 11, 2026 08:18
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