Add HDL rg module#11971
Open
lyh970817 wants to merge 1 commit into
Open
Conversation
This was referenced Jun 10, 2026
046fcee to
c657b79
Compare
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
HDL estimates SNP heritability and pairwise genetic correlation from GWAS summary statistics. This PR upstreams
hdl/rg, which estimates pairwise genetic correlation from two canonicalized GWAS summary statistics files with an HDL LD reference panel.The HDL fixtures used by these tests are available on the merged
nf-core/test-datasetsmodulesbranch from nf-core/test-datasets#1932.PR checklist
topic: versions- See version_topicslabelnf-core modules test hdl/rg --profile dockernf-core modules test hdl/rg --profile singularitynf-core modules test hdl/rg --profile conda