Add validation for missing bait/target intervals with picard_collecthsmetrics - #280
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maxulysse wants to merge 5 commits into
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Add validation for missing bait/target intervals with picard_collecthsmetrics#280maxulysse wants to merge 5 commits into
maxulysse wants to merge 5 commits into
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❌ nf-test failed with latest Nextflow versionNote Tests with Nextflow's latest version failed but it will not cause a CI workflow failure.
See the full run for details. |
- Change missing fasta warning to error for picard/riker tools - Add validation for riker collectors (wgs, gcbias, error, rna) that require interval files not yet supported as pipeline parameters - Move picard missing fasta test from no_genome to tools_picard - Add tests for riker unsupported collectors validation
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Add validation that fails fast with a clear error message when
picard_collecthsmetricsis requested but--bait_intervalsand/or--target_intervalsare not provided.Changes:
error()inPIPELINE_INITIALISATIONsubworkflow for missing intervalstests/tools_picard.nf.testverifying the validationGenerated by opencode
Verified by @maxulysse