DRAFT working on #1002 #1003
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| pattern_name: abnormallyDilatedAnatomicalEntityLumen | ||||||
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| pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyDilatedAnatomicalEntityLumen.yaml | ||||||
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| description: 'An abnormally dilated lumen/cavity/space of anatomical entity, for example, an abnormally dilated capillary lumen. This covers anatomical entities for which there is not a separate term for the lumen/cavity/space within the entity. If there is a term for the space within an entity you should use the abnormallyDilatedAnatomicalEntity pattern.' | ||||||
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Collaborator
There was a problem hiding this comment. The pattern name should be updated to : abnormallyDilatedImmaterialAnatomicalEntity
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There was a problem hiding this comment. Nico asked me not to do that as it would break the downstream uPheno processes. |
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| # examples: | ||||||
| # - http://purl.obolibrary.org/obo/XPO_0115624 | ||||||
| # - http://purl.obolibrary.org/obo/MP_0001123 | ||||||
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| contributors: | ||||||
| - https://orcid.org/0000-0003-4606-0597 | ||||||
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| classes: | ||||||
| abnormal: PATO:0000460 | ||||||
| material_anatomical_entity: UBERON:0000465 | ||||||
| dilated: PATO:0001571 | ||||||
| anatomical space: UBERON:0000464 | ||||||
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| relations: | ||||||
| characteristic_of: RO:0000052 | ||||||
| has_modifier: RO:0002573 | ||||||
| has_part: BFO:0000051 | ||||||
| luminal_space_of: RO:0002572 | ||||||
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| annotationProperties: | ||||||
| exact_synonym: oio:hasExactSynonym | ||||||
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| vars: | ||||||
| material_anatomical_entity: "'material anatomical_entity'" | ||||||
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Collaborator
There was a problem hiding this comment. typo: underscore missing between "material" and "anatomical"
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| name: | ||||||
| text: "abnormally dilated %s" | ||||||
| vars: | ||||||
| - material_anatomical_entity | ||||||
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| annotations: | ||||||
| - annotationProperty: exact_synonym | ||||||
| text: "abnormal %s dilation" | ||||||
| vars: | ||||||
| - material_anatomical_entity | ||||||
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| - annotationProperty: exact_synonym | ||||||
| text: "dilated %s" | ||||||
| vars: | ||||||
| - material_anatomical_entity | ||||||
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| def: | ||||||
| text: "Abnormal dilation of the lumen of %s." | ||||||
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sabrinatoro marked this conversation as resolved.
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| vars: | ||||||
| - material_anatomical_entity | ||||||
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| equivalentTo: | ||||||
| text: "'has_part' some ('dilated' and ('characteristic_of' some ('anatomical space' and ('luminal space of' some %s))) and ('has_modifier' some 'abnormal'))" | ||||||
| vars: | ||||||
| - material_anatomical_entity | ||||||
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Typo at the end of abnormallyDilatedAnatomicalEntityLumen
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If no space term exists, use the abnormallyDilatedAnatomicalEntityLumen pattern.