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Add cell nucleus label overrides for GO:0005634 terms (#972) #1022

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Add cell nucleus label overrides for GO:0005634 terms (#972) #1022

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c3fadf8
Add cell nucleus label overrides for GO:0005634 terms (#972)
matentzn Apr 5, 2026
beedc4e
Add .claude/ to gitignore
matentzn Apr 5, 2026
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1 change: 1 addition & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -314,6 +314,7 @@ src/ontology/reports/obsoletes.tsv
src/ontology/reports/synonyms.tsv
src/ontology/reports/xrefs.tsv
.idea/
.claude/
*.pyc
/imports
/patterns
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3,348 changes: 1,674 additions & 1,674 deletions src/patterns/data/automatic/abnormalAbsenceOfAnatomicalEntity.tsv
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72 changes: 36 additions & 36 deletions src/patterns/data/automatic/abnormalAbsenceOfProteinLocalizationInCellularComponent.tsv
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Original file line number Diff line number Diff line change
@@ -1,36 +1,36 @@
location defined_class
http://purl.obolibrary.org/obo/GO_0031254 http://purl.obolibrary.org/obo/UPHENO_0083600
http://purl.obolibrary.org/obo/GO_0031410 http://purl.obolibrary.org/obo/UPHENO_0083601
http://purl.obolibrary.org/obo/GO_0005905 http://purl.obolibrary.org/obo/UPHENO_0083602
http://purl.obolibrary.org/obo/GO_0031252 http://purl.obolibrary.org/obo/UPHENO_0083603
http://purl.obolibrary.org/obo/GO_0072686 http://purl.obolibrary.org/obo/UPHENO_0083604
http://purl.obolibrary.org/obo/GO_0062201 http://purl.obolibrary.org/obo/UPHENO_0083605
http://purl.obolibrary.org/obo/GO_0009986 http://purl.obolibrary.org/obo/UPHENO_0083606
http://purl.obolibrary.org/obo/GO_0110085 http://purl.obolibrary.org/obo/UPHENO_0090013
http://purl.obolibrary.org/obo/GO_0044354 http://purl.obolibrary.org/obo/UPHENO_0083607
http://purl.obolibrary.org/obo/GO_0000331 http://purl.obolibrary.org/obo/UPHENO_0083608
http://purl.obolibrary.org/obo/GO_0005764 http://purl.obolibrary.org/obo/UPHENO_0083609
http://purl.obolibrary.org/obo/GO_1990023 http://purl.obolibrary.org/obo/UPHENO_0083610
http://purl.obolibrary.org/obo/GO_0005765 http://purl.obolibrary.org/obo/UPHENO_0083611
http://purl.obolibrary.org/obo/GO_0005886 http://purl.obolibrary.org/obo/UPHENO_0083612
http://purl.obolibrary.org/obo/GO_0044291 http://purl.obolibrary.org/obo/UPHENO_0083613
http://purl.obolibrary.org/obo/GO_0005815 http://purl.obolibrary.org/obo/UPHENO_0083614
http://purl.obolibrary.org/obo/GO_0005938 http://purl.obolibrary.org/obo/UPHENO_0083615
http://purl.obolibrary.org/obo/GO_0031164 http://purl.obolibrary.org/obo/UPHENO_0083616
http://purl.obolibrary.org/obo/GO_0032154 http://purl.obolibrary.org/obo/UPHENO_0083617
http://purl.obolibrary.org/obo/GO_0030175 http://purl.obolibrary.org/obo/UPHENO_0083618
http://purl.obolibrary.org/obo/GO_0031143 http://purl.obolibrary.org/obo/UPHENO_0083619
http://purl.obolibrary.org/obo/GO_0032195 http://purl.obolibrary.org/obo/UPHENO_0083620
http://purl.obolibrary.org/obo/GO_0036019 http://purl.obolibrary.org/obo/UPHENO_0083621
http://purl.obolibrary.org/obo/GO_0071944 http://purl.obolibrary.org/obo/UPHENO_0083622
http://purl.obolibrary.org/obo/GO_0016323 http://purl.obolibrary.org/obo/UPHENO_0083623
http://purl.obolibrary.org/obo/GO_0016324 http://purl.obolibrary.org/obo/UPHENO_0083624
http://purl.obolibrary.org/obo/GO_0045335 http://purl.obolibrary.org/obo/UPHENO_0083625
http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0083626
http://purl.obolibrary.org/obo/GO_0005635 http://purl.obolibrary.org/obo/UPHENO_0083627
http://purl.obolibrary.org/obo/GO_0005813 http://purl.obolibrary.org/obo/UPHENO_0083628
http://purl.obolibrary.org/obo/GO_0005737 http://purl.obolibrary.org/obo/UPHENO_0083629
http://purl.obolibrary.org/obo/GO_0005730 http://purl.obolibrary.org/obo/UPHENO_0083630
http://purl.obolibrary.org/obo/GO_0005874 http://purl.obolibrary.org/obo/UPHENO_0083631
http://purl.obolibrary.org/obo/GO_0005776 http://purl.obolibrary.org/obo/UPHENO_0083632
http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0083633
location defined_class defined_class_name
http://purl.obolibrary.org/obo/GO_0031254 http://purl.obolibrary.org/obo/UPHENO_0083600
http://purl.obolibrary.org/obo/GO_0031410 http://purl.obolibrary.org/obo/UPHENO_0083601
http://purl.obolibrary.org/obo/GO_0005905 http://purl.obolibrary.org/obo/UPHENO_0083602
http://purl.obolibrary.org/obo/GO_0031252 http://purl.obolibrary.org/obo/UPHENO_0083603
http://purl.obolibrary.org/obo/GO_0072686 http://purl.obolibrary.org/obo/UPHENO_0083604
http://purl.obolibrary.org/obo/GO_0062201 http://purl.obolibrary.org/obo/UPHENO_0083605
http://purl.obolibrary.org/obo/GO_0009986 http://purl.obolibrary.org/obo/UPHENO_0083606
http://purl.obolibrary.org/obo/GO_0110085 http://purl.obolibrary.org/obo/UPHENO_0090013
http://purl.obolibrary.org/obo/GO_0044354 http://purl.obolibrary.org/obo/UPHENO_0083607
http://purl.obolibrary.org/obo/GO_0000331 http://purl.obolibrary.org/obo/UPHENO_0083608
http://purl.obolibrary.org/obo/GO_0005764 http://purl.obolibrary.org/obo/UPHENO_0083609
http://purl.obolibrary.org/obo/GO_1990023 http://purl.obolibrary.org/obo/UPHENO_0083610
http://purl.obolibrary.org/obo/GO_0005765 http://purl.obolibrary.org/obo/UPHENO_0083611
http://purl.obolibrary.org/obo/GO_0005886 http://purl.obolibrary.org/obo/UPHENO_0083612
http://purl.obolibrary.org/obo/GO_0044291 http://purl.obolibrary.org/obo/UPHENO_0083613
http://purl.obolibrary.org/obo/GO_0005815 http://purl.obolibrary.org/obo/UPHENO_0083614
http://purl.obolibrary.org/obo/GO_0005938 http://purl.obolibrary.org/obo/UPHENO_0083615
http://purl.obolibrary.org/obo/GO_0031164 http://purl.obolibrary.org/obo/UPHENO_0083616
http://purl.obolibrary.org/obo/GO_0032154 http://purl.obolibrary.org/obo/UPHENO_0083617
http://purl.obolibrary.org/obo/GO_0030175 http://purl.obolibrary.org/obo/UPHENO_0083618
http://purl.obolibrary.org/obo/GO_0031143 http://purl.obolibrary.org/obo/UPHENO_0083619
http://purl.obolibrary.org/obo/GO_0032195 http://purl.obolibrary.org/obo/UPHENO_0083620
http://purl.obolibrary.org/obo/GO_0036019 http://purl.obolibrary.org/obo/UPHENO_0083621
http://purl.obolibrary.org/obo/GO_0071944 http://purl.obolibrary.org/obo/UPHENO_0083622
http://purl.obolibrary.org/obo/GO_0016323 http://purl.obolibrary.org/obo/UPHENO_0083623
http://purl.obolibrary.org/obo/GO_0016324 http://purl.obolibrary.org/obo/UPHENO_0083624
http://purl.obolibrary.org/obo/GO_0045335 http://purl.obolibrary.org/obo/UPHENO_0083625
http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0083626
http://purl.obolibrary.org/obo/GO_0005635 http://purl.obolibrary.org/obo/UPHENO_0083627
http://purl.obolibrary.org/obo/GO_0005813 http://purl.obolibrary.org/obo/UPHENO_0083628
http://purl.obolibrary.org/obo/GO_0005737 http://purl.obolibrary.org/obo/UPHENO_0083629
http://purl.obolibrary.org/obo/GO_0005730 http://purl.obolibrary.org/obo/UPHENO_0083630
http://purl.obolibrary.org/obo/GO_0005874 http://purl.obolibrary.org/obo/UPHENO_0083631
http://purl.obolibrary.org/obo/GO_0005776 http://purl.obolibrary.org/obo/UPHENO_0083632
http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0083633 absent protein localization in cell nucleus
70 changes: 35 additions & 35 deletions src/patterns/data/automatic/abnormalEfficacyOfProteinLocalizationInCellularComponent.tsv
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@@ -1,35 +1,35 @@
location defined_class
http://purl.obolibrary.org/obo/GO_0031254 http://purl.obolibrary.org/obo/UPHENO_0082958
http://purl.obolibrary.org/obo/GO_0031410 http://purl.obolibrary.org/obo/UPHENO_0082959
http://purl.obolibrary.org/obo/GO_0005905 http://purl.obolibrary.org/obo/UPHENO_0082960
http://purl.obolibrary.org/obo/GO_0031252 http://purl.obolibrary.org/obo/UPHENO_0082961
http://purl.obolibrary.org/obo/GO_0072686 http://purl.obolibrary.org/obo/UPHENO_0082962
http://purl.obolibrary.org/obo/GO_0062201 http://purl.obolibrary.org/obo/UPHENO_0082963
http://purl.obolibrary.org/obo/GO_0009986 http://purl.obolibrary.org/obo/UPHENO_0082964
http://purl.obolibrary.org/obo/GO_0110085 http://purl.obolibrary.org/obo/UPHENO_0090112
http://purl.obolibrary.org/obo/GO_0044354 http://purl.obolibrary.org/obo/UPHENO_0082965
http://purl.obolibrary.org/obo/GO_0005764 http://purl.obolibrary.org/obo/UPHENO_0082966
http://purl.obolibrary.org/obo/GO_1990023 http://purl.obolibrary.org/obo/UPHENO_0082967
http://purl.obolibrary.org/obo/GO_0005765 http://purl.obolibrary.org/obo/UPHENO_0082968
http://purl.obolibrary.org/obo/GO_0005886 http://purl.obolibrary.org/obo/UPHENO_0082969
http://purl.obolibrary.org/obo/GO_0044291 http://purl.obolibrary.org/obo/UPHENO_0082970
http://purl.obolibrary.org/obo/GO_0005815 http://purl.obolibrary.org/obo/UPHENO_0082971
http://purl.obolibrary.org/obo/GO_0005938 http://purl.obolibrary.org/obo/UPHENO_0082972
http://purl.obolibrary.org/obo/GO_0031164 http://purl.obolibrary.org/obo/UPHENO_0082973
http://purl.obolibrary.org/obo/GO_0032154 http://purl.obolibrary.org/obo/UPHENO_0082974
http://purl.obolibrary.org/obo/GO_0030175 http://purl.obolibrary.org/obo/UPHENO_0082975
http://purl.obolibrary.org/obo/GO_0031143 http://purl.obolibrary.org/obo/UPHENO_0082976
http://purl.obolibrary.org/obo/GO_0032195 http://purl.obolibrary.org/obo/UPHENO_0082977
http://purl.obolibrary.org/obo/GO_0036019 http://purl.obolibrary.org/obo/UPHENO_0082978
http://purl.obolibrary.org/obo/GO_0071944 http://purl.obolibrary.org/obo/UPHENO_0082979
http://purl.obolibrary.org/obo/GO_0016323 http://purl.obolibrary.org/obo/UPHENO_0082980
http://purl.obolibrary.org/obo/GO_0016324 http://purl.obolibrary.org/obo/UPHENO_0082981
http://purl.obolibrary.org/obo/GO_0045335 http://purl.obolibrary.org/obo/UPHENO_0082982
http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0082983
http://purl.obolibrary.org/obo/GO_0005635 http://purl.obolibrary.org/obo/UPHENO_0082984
http://purl.obolibrary.org/obo/GO_0005813 http://purl.obolibrary.org/obo/UPHENO_0082985
http://purl.obolibrary.org/obo/GO_0005737 http://purl.obolibrary.org/obo/UPHENO_0082986
http://purl.obolibrary.org/obo/GO_0005730 http://purl.obolibrary.org/obo/UPHENO_0082987
http://purl.obolibrary.org/obo/GO_0005874 http://purl.obolibrary.org/obo/UPHENO_0082988
http://purl.obolibrary.org/obo/GO_0005776 http://purl.obolibrary.org/obo/UPHENO_0082989
http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0082990
location defined_class defined_class_name
http://purl.obolibrary.org/obo/GO_0031254 http://purl.obolibrary.org/obo/UPHENO_0082958
http://purl.obolibrary.org/obo/GO_0031410 http://purl.obolibrary.org/obo/UPHENO_0082959
http://purl.obolibrary.org/obo/GO_0005905 http://purl.obolibrary.org/obo/UPHENO_0082960
http://purl.obolibrary.org/obo/GO_0031252 http://purl.obolibrary.org/obo/UPHENO_0082961
http://purl.obolibrary.org/obo/GO_0072686 http://purl.obolibrary.org/obo/UPHENO_0082962
http://purl.obolibrary.org/obo/GO_0062201 http://purl.obolibrary.org/obo/UPHENO_0082963
http://purl.obolibrary.org/obo/GO_0009986 http://purl.obolibrary.org/obo/UPHENO_0082964
http://purl.obolibrary.org/obo/GO_0110085 http://purl.obolibrary.org/obo/UPHENO_0090112
http://purl.obolibrary.org/obo/GO_0044354 http://purl.obolibrary.org/obo/UPHENO_0082965
http://purl.obolibrary.org/obo/GO_0005764 http://purl.obolibrary.org/obo/UPHENO_0082966
http://purl.obolibrary.org/obo/GO_1990023 http://purl.obolibrary.org/obo/UPHENO_0082967
http://purl.obolibrary.org/obo/GO_0005765 http://purl.obolibrary.org/obo/UPHENO_0082968
http://purl.obolibrary.org/obo/GO_0005886 http://purl.obolibrary.org/obo/UPHENO_0082969
http://purl.obolibrary.org/obo/GO_0044291 http://purl.obolibrary.org/obo/UPHENO_0082970
http://purl.obolibrary.org/obo/GO_0005815 http://purl.obolibrary.org/obo/UPHENO_0082971
http://purl.obolibrary.org/obo/GO_0005938 http://purl.obolibrary.org/obo/UPHENO_0082972
http://purl.obolibrary.org/obo/GO_0031164 http://purl.obolibrary.org/obo/UPHENO_0082973
http://purl.obolibrary.org/obo/GO_0032154 http://purl.obolibrary.org/obo/UPHENO_0082974
http://purl.obolibrary.org/obo/GO_0030175 http://purl.obolibrary.org/obo/UPHENO_0082975
http://purl.obolibrary.org/obo/GO_0031143 http://purl.obolibrary.org/obo/UPHENO_0082976
http://purl.obolibrary.org/obo/GO_0032195 http://purl.obolibrary.org/obo/UPHENO_0082977
http://purl.obolibrary.org/obo/GO_0036019 http://purl.obolibrary.org/obo/UPHENO_0082978
http://purl.obolibrary.org/obo/GO_0071944 http://purl.obolibrary.org/obo/UPHENO_0082979
http://purl.obolibrary.org/obo/GO_0016323 http://purl.obolibrary.org/obo/UPHENO_0082980
http://purl.obolibrary.org/obo/GO_0016324 http://purl.obolibrary.org/obo/UPHENO_0082981
http://purl.obolibrary.org/obo/GO_0045335 http://purl.obolibrary.org/obo/UPHENO_0082982
http://purl.obolibrary.org/obo/GO_0005575 http://purl.obolibrary.org/obo/UPHENO_0082983
http://purl.obolibrary.org/obo/GO_0005635 http://purl.obolibrary.org/obo/UPHENO_0082984
http://purl.obolibrary.org/obo/GO_0005813 http://purl.obolibrary.org/obo/UPHENO_0082985
http://purl.obolibrary.org/obo/GO_0005737 http://purl.obolibrary.org/obo/UPHENO_0082986
http://purl.obolibrary.org/obo/GO_0005730 http://purl.obolibrary.org/obo/UPHENO_0082987
http://purl.obolibrary.org/obo/GO_0005874 http://purl.obolibrary.org/obo/UPHENO_0082988
http://purl.obolibrary.org/obo/GO_0005776 http://purl.obolibrary.org/obo/UPHENO_0082989
http://purl.obolibrary.org/obo/GO_0005634 http://purl.obolibrary.org/obo/UPHENO_0082990 abnormal protein localization in cell nucleus
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