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README: list shinyngs in Available Studios #33

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pinin4fjords merged 1 commit into from
Apr 27, 2026
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README: list shinyngs in Available Studios #33

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6 changes: 4 additions & 2 deletions README.md
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Expand Up @@ -16,14 +16,15 @@ This repository uses a **branch-per-studio** model (similar to [nf-core/test-dat
| [`cellxgene`](https://github.com/seqeralabs/custom-studios-examples/tree/cellxgene) | CellxGene | Interactive single-cell data visualization |
| [`streamlit`](https://github.com/seqeralabs/custom-studios-examples/tree/streamlit) | Streamlit | MultiQC visualization using Streamlit |
| [`shiny`](https://github.com/seqeralabs/custom-studios-examples/tree/shiny) | R Shiny | Interactive data visualization with R Shiny |
| [`shinyngs`](https://github.com/seqeralabs/custom-studios-examples/tree/shinyngs) | Shinyngs | RNA-seq exploration with the `shinyngs` R package |
| [`ttyd`](https://github.com/seqeralabs/custom-studios-examples/tree/ttyd) | TTYD | Web-based terminal with bioinformatics tools |

## Quick Start: Launch from Git Repository

1. Navigate to **Studios** > **Add Studio** in your Seqera Platform workspace
2. Select **Git repository** as the source
3. Enter the repository URL: `https://github.com/seqeralabs/custom-studios-examples`
4. Select the branch for the studio you want (e.g., `marimo`, `cellxgene`, `streamlit`, `shiny`, `ttyd`)
4. Select the branch for the studio you want (e.g., `marimo`, `cellxgene`, `streamlit`, `shiny`, `shinyngs`, `ttyd`)
5. Select your compute environment
6. Click **Add** then **Start**

Expand All @@ -41,6 +42,7 @@ ghcr.io/seqeralabs/custom-studios-examples/marimo:latest
ghcr.io/seqeralabs/custom-studios-examples/cellxgene:latest
ghcr.io/seqeralabs/custom-studios-examples/streamlit:latest
ghcr.io/seqeralabs/custom-studios-examples/shiny:latest
ghcr.io/seqeralabs/custom-studios-examples/shinyngs:latest
ghcr.io/seqeralabs/custom-studios-examples/ttyd:latest
```

Expand Down Expand Up @@ -85,7 +87,7 @@ Some studios support environment variable configuration:
| CellxGene | `ANNOTATIONS_DIR` | `/user-data/cellxgene` | Annotations storage |
| Shiny | `DATA_PATH` | `s3://shiny-inputs/data.csv` | Path to CSV data file |

Studios without listed variables (Marimo, Streamlit, TTYD) work with their default configurations.
Studios without listed variables (Marimo, Shinyngs, Streamlit, TTYD) work with their default configurations.

## Common Features

Expand Down