📊 A universal enrichment tool for interpreting omics data
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Aug 14, 2026 - R
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kegg
Here are 102 public repositories matching this topic...
Make Picrust2 Output Analysis and Visualization Easier
visualization ggplot2 bioinformatics r data-visualization metagenomics microbiome r-package kegg pathway-analysis microbiota metagenomic-analysis phyloseq gut-microbiome functional-prediction 16s-rrna picrust2 functional-data differential-abundance tax4fun2
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Aug 11, 2026 - R
Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.
visualbasic metabolomics mass-spectrometry chemoinformatics lc-ms lipidomics single-cell kegg maldi gc-ms r-sharp gcxgc raman-spectroscopy metadna mzkit ms-imaging ms-dial single-cell-metabolism
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Aug 20, 2026 - Visual Basic .NET
PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
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Dec 28, 2022 - Python
KEGG Module Evaluation Tool
gem kegg metabolic-models metabolic-reconstruction gap-filling genome-scale-metabolic-model kegg-modules
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Mar 5, 2026 - Python
An interactive radial tree for functional hierarchies and omics data visualization
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Mar 27, 2026 - HTML
A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.
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Jul 22, 2023 - Python
A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML, and various other formats.
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Jun 26, 2023 - Java
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
gene-annotation gene-ontology pathways kegg pathway-analysis reactome kegg-pathway real-time-analytics enrichment-analysis real-time-processing functional-analysis kegg-gene gene-set-clustering
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Oct 30, 2020 - Perl
Library for KEGG pathway enrichment analysis
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Jul 12, 2026 - Python
Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
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Jan 21, 2022 - R
A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
visualization bioinformatics r web-application shiny-apps geneset-enrichment kegg kegg-pathway gsea geneset-enrichment-analysis
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Jan 27, 2020 - R
Function Enrichment analysis and Network construction
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Apr 25, 2026 - R
Build Annotation package by using information from KEGG, NCBI, Ensembl
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May 4, 2023 - R
Utilizing graphical neural networks and embeddings on a medical database KEGG to perform link predictions and drug similarity systems.
machine-learning neural-network graphs knowledge-graph kegg biomedical link-prediction graph-convolutional-networks graph-neural-networks ampligraph
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Oct 2, 2021 - Jupyter Notebook
A comprehensive gene set function enrichment tool for multiple species.
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Mar 23, 2020 - Shell
A Bio2BEL package for integrating pathway-related information from KEGG in BEL
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Feb 11, 2022 - Python
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