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Remove outdated information - #5218

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Vince-janv wants to merge 5 commits into
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5217-clean-up-documentation
Open

Remove outdated information#5218
Vince-janv wants to merge 5 commits into
masterfrom
5217-clean-up-documentation

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@Vince-janv

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Description

This PR removes outdated documentation as well as trims down the pull request template

Changed

  • Removed the docs folder
  • Removed the changelog
  • Removed CONTRIBUTING.md
  • Removed SUMMARY.md
  • Trimmed down pull request template

@Vince-janv
Vince-janv requested a review from a team as a code owner July 24, 2026 09:36

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@diitaz93 What do you think of this change? Do you thing the other headings except Description and added/changed/fixed are useful?

@Vince-janv Vince-janv linked an issue Jul 24, 2026 that may be closed by this pull request
@sonarqubecloud

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@diitaz93 diitaz93 left a comment

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I like the cleaning! 🧹 I would like to keep some of the deployment snippets though

Comment on lines -22 to -24
```shell
bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_cg -t cg -b [THIS-BRANCH-NAME] -a
```

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I use this shortcut very often; it would be great to keep it somehow. Maybe the rest of the items in this section can go.

Comment on lines -26 to -33
### How to test

- [ ] Do ...

### Expected test outcome

- [ ] Check that ...
- [ ] Take a screenshot and attach or copy/paste the output.

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I'm ok with removing this. Maybe we could add a section reminding us to paste test results in the comments, hiding sensitive information, but if you find it superfluous, let's just remove it

Comment thread CHANGELOG.md
@@ -1,1821 +0,0 @@
# Change Log

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A reminder for this #5032

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but I agree to remove this; we could find a better way of doing this if we find it necessary

Comment thread DEPLOYMENT.md
```shell
bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_cg -t cg -b [YOUR-BRANCH-NAME] -a
```
### Deploy APP

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I would like some instructions on how to deploy to the VMs manually. They don't need to be here, but maybe there should be a link to a page in Atlas here (a page that currently does not exist)

Comment thread DEPLOYMENT.md
1. ssh to the login-node
2. Install your branch
```shell
bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_cg -t cg -b [YOUR-BRANCH-NAME] -a

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I would like this file to concern only the deployment of master, and leave deployment instructions for testing purposes somewhere else. I use this snippet (containing master) very often, so I would like to keep it if possible

Comment thread DEPLOYMENT.md
bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-prod.sh -e P_cg -t cg -b master -a
```
### Deploy APP
1. Use the action **[Deploy release to production environment](https://github.com/Clinical-Genomics/cg/actions/workflows/deploy_prod.yml)** to deploy your branch. Make sure to provide the **release-tag** and NOT master to the action.

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It is not clear that we have to use the "v" when specifying the tag (in trailblazer we shouldn't)

Suggested change
1. Use the action **[Deploy release to production environment](https://github.com/Clinical-Genomics/cg/actions/workflows/deploy_prod.yml)** to deploy your branch. Make sure to provide the **release-tag** and NOT master to the action.
1. Use the action **[Deploy release to production environment](https://github.com/Clinical-Genomics/cg/actions/workflows/deploy_prod.yml)** to deploy your branch. Make sure to provide the **release-tag** and NOT master to the action. (e.g. `v80.2.15`)

Comment thread DEPLOYMENT.md
the title if not.


4. Append version increment value `( major | minor | patch )` to specify what kind of release is to be created.

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maybe we should keep this information somewhere

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