Revise Apptainer uv installation and usage guide

.memsearch/.index-state.json

@@ -0,0 +1,16 @@
+{
+  "collection": "ms_rts_docs_f1cd2d40",
+  "failed_files": [],
+  "indexed_chunks": 1,
+  "indexed_files": 6,
+  "last_completed_at": "2026-07-21T18:32:57.171985Z",
+  "last_started_at": "2026-07-21T18:32:55.572924Z",
+  "last_success_at": "2026-07-21T18:32:57.171985Z",
+  "milvus_uri": "~/.memsearch/milvus.db",
+  "operation": "index",
+  "paths": ["/Users/ss19980/Documents/packages/rts-docs/.memsearch/memory"],
+  "schema_version": 1,
+  "status": "ok",
+  "total_files": 6,
+  "updated_at": "2026-07-21T18:32:57.171985Z"
+}

.memsearch/memory/2026-07-08.md

@@ -0,0 +1,24 @@
+
+## Session 12:25
+
+### 12:25
+<!-- session:3adb3114-7379-4a67-80f3-8f85c871e14b turn:955855f1-7d5a-4865-bb0b-80d09dacc2fb transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/3adb3114-7379-4a67-80f3-8f85c871e14b.jsonl -->
+- User asked about broad differences between RedHat, Microsoft, and Google Vale linter styles for technical writing.
+- Claude Code responded entirely from memory without invoking any tools.
+- The response included a comparison table covering tone/formality, hedging words, Latin abbreviations, UI interaction verbs, passive voice, and number formatting conventions.
+- Claude Code noted practical overlap between all three styles (sentence case, second person, active voice, Oxford comma, inclusive language) and offered recommendations based on audience type.
+
+
+## Session 12:29
+
+### 12:29
+<!-- session:3adb3114-7379-4a67-80f3-8f85c871e14b turn:1db7479b-6545-48bc-9ba8-0b8b208aab50 transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/3adb3114-7379-4a67-80f3-8f85c871e14b.jsonl -->
+- User instructed Claude Code to use at most 10 documents as samples (continuing a prior conversation about Vale linter style guides).
+- Claude Code ran a `find` command to list up to 50 markdown files in `/Users/ss19980/Documents/packages/rts-docs/docs`.
+- Claude Code sampled the first 60 lines of 10 representative documents using a `for` loop over selected file paths.
+- Claude Code analyzed the samples and reported a feature table covering heading case, contractions, UI verbs, Latin abbreviations, passive voice, "please" usage, number formatting, and tone.
+- Claude Code concluded that Red Hat's style guide was the best fit for the existing docs, citing alignment on title-case headings, "click" usage, passive voice tolerance, and Latin abbreviations, while noting heavy "please" usage as a gap shared by all three guides.
+
+
+## Session 15:03
+

.memsearch/memory/2026-07-09.md

@@ -0,0 +1,53 @@
+
+## Session 11:05
+
+### 11:05
+<!-- session:cfe7cedb-d935-463c-b794-2d5b7c751306 turn:33e2e6bc-a17e-4ca6-b01d-d222e2e60f5a transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/cfe7cedb-d935-463c-b794-2d5b7c751306.jsonl -->
+- User reported that a rule was renamed to `name-replacements` according to release notes.
+- Claude Code edited `/Users/ss19980/Documents/packages/rts-docs/eslint.config.mjs`, replacing `unicorn/prevent-abbreviations` with `unicorn/name-replacements` at line 115.
+- Claude Code noted the options format (`replacements` with `false` values) remained unchanged, so no further edits were needed.
+
+
+## Session 11:06
+
+### 11:06
+<!-- session:cfe7cedb-d935-463c-b794-2d5b7c751306 turn:757a3a74-223e-455b-9af2-517249db0615 transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/cfe7cedb-d935-463c-b794-2d5b7c751306.jsonl -->
+- User asked Claude Code to add a React settings block with `version: "19"` and a comment about avoiding auto-detection crashes to the ESLint config.
+- Claude Code identified that a `settings.react` block already existed in `/Users/ss19980/Documents/packages/rts-docs/eslint.config.mjs` with `version: "detect"`, so it updated the existing block rather than adding a duplicate.
+- Claude Code used the `Edit` tool to replace the `version: "detect"` entry with `version: "19"` and appended the `// Avoids auto-detection crash` comment inline.
+
+
+## Session 11:13
+
+### 11:13
+<!-- session:cfe7cedb-d935-463c-b794-2d5b7c751306 turn:ab47deb8-bcca-4fdc-ba7d-3e9239a10b28 transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/cfe7cedb-d935-463c-b794-2d5b7c751306.jsonl -->
+- User asked Claude Code to fix `eslint-plugin-unicorn` to be compatible with ESLint 9 by downgrading it.
+- Claude Code checked the current version (`^71.1.0`) in `package.json`, then queried npm to find the latest v5x compatible versions, identifying `59.0.1` as the last ESLint 9 compatible release.
+- Claude Code edited `/Users/ss19980/Documents/packages/rts-docs/package.json` to change the version from `^71.1.0` to `^59.0.1`.
+- Claude Code also reverted a previous rule rename in `/Users/ss19980/Documents/packages/rts-docs/eslint.config.mjs`, changing `unicorn/name-replacements` back to `unicorn/prevent-abbreviations` (which exists in v59).
+- Claude Code ran `pnpm install` to apply the downgrade and then verified the ESLint config loaded cleanly with `pnpm eslint --print-config`, which returned `OK`.
+
+
+## Session 11:27
+
+
+## Session 11:30
+
+### 11:30
+<!-- session:f29d1b28-c008-4d51-bb35-1f98ef3c564d turn:8737a895-62b0-445d-ae45-88e1c5e43715 transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/f29d1b28-c008-4d51-bb35-1f98ef3c564d.jsonl -->
+- User asked Claude Code to fix TypeScript errors reported by `pnpm typecheck` in `scripts/storage-finder-data-generator/config.ts:126` and `src/pages/storage-finder.tsx:117`.
+- Claude Code read the relevant files and ran `pnpm typecheck` to confirm the errors, identifying two root causes: a `fallback` field typed as a bare string instead of `string[]` (with a typo), and `ServiceFieldData` referencing `field_synchronous_access` which the data generator never produces.
+- Claude Code read `config.ts`, `generate.ts`, `types.ts`, and the `FIELD_DEFINITIONS` array to determine the actual set of fields the generator outputs.
+- Claude Code edited `config.ts:126` to change `fallback: "risk-classficiation.public-low"` to `fallback: ["risk-classification.public-low"]`, fixing both the type violation and the typo.
+- Claude Code edited the `ServiceFieldData` interface in `storage-finder.tsx` to remove `field_synchronous_access` and align the required fields with what `FIELD_DEFINITIONS` actually generates (adding `field_access_location` and `field_additional_features`).
+- Claude Code ran `pnpm typecheck` again and confirmed it exited cleanly with no errors.
+
+
+## Session 11:31
+
+### 11:31
+<!-- session:f29d1b28-c008-4d51-bb35-1f98ef3c564d turn:6d72368d-dc39-48f9-ba68-59f00e2d0d87 transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/f29d1b28-c008-4d51-bb35-1f98ef3c564d.jsonl -->
+- User asked Claude Code to commit the pending changes.
+- Claude Code ran `git status && git diff` and `git log --oneline -5` to inspect the two modified files (`config.ts` and `storage-finder.tsx`) and check the project's commit message style.
+- Claude Code staged both files with `git add` and created a commit; the pre-commit hook ran lint-staged (ESLint and Prettier) over both files before finalising the commit as `61801fa766` on branch `docusaurus_bump`.
+

.memsearch/memory/2026-07-10.md

@@ -0,0 +1,150 @@
+
+## Session 14:18
+
+### 14:18
+<!-- session:61e1b1af-579a-410d-8567-578be2798876 turn:7e7d7009-bba5-4de6-b628-8f0cdd14aa79 transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/61e1b1af-579a-410d-8567-578be2798876.jsonl -->
+- User asked why `.github/workflows/lint.yaml` does not report inline annotations when it finds issues.
+- Claude Code read `/Users/ss19980/Documents/packages/rts-docs/.github/workflows/lint.yaml` to inspect its contents.
+- Claude Code identified that line 34 sets `reporter: github-pr-check`, which requires `checks: write` permission, but the workflow only grants `contents: read` and `pull-requests: write`, causing annotations to fail silently.
+- Claude Code proposed two fixes: adding `checks: write` to the permissions block, or switching the reporter to `github-pr-review` which works with the already-granted `pull-requests: write`.
+
+
+## Session 14:20
+
+### 14:19
+<!-- session:61e1b1af-579a-410d-8567-578be2798876 turn:cd851cad-ba1a-4676-b37e-1f724c035cc4 transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/61e1b1af-579a-410d-8567-578be2798876.jsonl -->
+- User asked to apply fix option 2 from the previous session's proposed solutions for missing inline annotations in the lint workflow.
+- Claude Code edited `/Users/ss19980/Documents/packages/rts-docs/.github/workflows/lint.yaml`, replacing `reporter: github-pr-check` with `reporter: github-pr-review` on line 34.
+
+
+## Session 14:25
+
+### 14:25
+<!-- session:61e1b1af-579a-410d-8567-578be2798876 turn:4e9175ff-7e8d-48cb-8d1c-86013ae1ee3d transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/61e1b1af-579a-410d-8567-578be2798876.jsonl -->
+- User asked about the security implications of granting `checks: write` versus `pull-requests: write` in the GitHub Actions lint workflow.
+- Claude Code explained that `checks: write` poses a higher integrity risk because it allows faking passing check runs, potentially bypassing branch protection rules, while `pull-requests: write` poses a higher social/trust risk by enabling PR approvals and comment manipulation.
+- Claude Code noted that for this docs linter use case, `pull-requests: write` is the narrower and preferable grant, and added that fork PRs are read-only regardless of declared permissions without `pull_request_target`.
+
+
+## Session 14:26
+
+### 14:26
+<!-- session:61e1b1af-579a-410d-8567-578be2798876 turn:2fa9b4fe-b2e4-47c1-89ed-646edd43f376 transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/61e1b1af-579a-410d-8567-578be2798876.jsonl -->
+- User asked what is preventing the GitHub Actions lint workflow from linting `.mdx` files.
+- Claude Code identified that `remark_args` in the workflow includes `--use=remark-mdx` (which adds the MDX parser) but lacks `--ext .mdx`, so remark's CLI never discovers `.mdx` files in its glob expansion.
+- Claude Code ran a `find` command to check for any `.remarkrc*` or `remark.config*` files under the project root, finding none.
+- Claude Code proposed adding `--ext .mdx` to `remark_args` as the fix.
+
+
+## Session 14:27
+
+### 14:27
+<!-- session:61e1b1af-579a-410d-8567-578be2798876 turn:b50c98a7-5ff5-43b2-b484-50b8894d48cf transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/61e1b1af-579a-410d-8567-578be2798876.jsonl -->
+- User asked Claude Code to apply the previously proposed fix (adding `--ext .mdx` to `remark_args`).
+- Claude Code edited `/Users/ss19980/Documents/packages/rts-docs/.github/workflows/lint.yaml`, appending `--ext .mdx` to the `remark_args` value so remark's CLI discovers `.mdx` files during linting.
+
+
+## Session 14:29
+
+### 14:29
+<!-- session:61e1b1af-579a-410d-8567-578be2798876 turn:3f3921be-1c96-4109-9304-aaefe5acc17a transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/61e1b1af-579a-410d-8567-578be2798876.jsonl -->
+- User asked Claude Code to pull the latest workflow logs and investigate why the lint workflow was failing.
+- Claude Code ran `gh run list --workflow=lint.yaml --limit=5` to list recent runs of the lint workflow.
+- All five returned runs showed a passing status, so Claude Code reported there were no failures to investigate and asked the user to clarify which run or PR they expected to be failing.
+
+
+## Session 14:32
+
+### 14:32
+<!-- session:61e1b1af-579a-410d-8567-578be2798876 turn:ad0055ad-e6c5-4d72-8d7a-586959016812 transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/61e1b1af-579a-410d-8567-578be2798876.jsonl -->
+- User asked Claude Code to check a specific GitHub Actions run (job 86434773457 of run 29114597485, associated with PR #394).
+- Claude Code fetched the job logs with `gh run view 29114597485 --job=86434773457 --log` and then grepped the output for error/failure signals.
+- Claude Code identified the root cause as a version mismatch: `remark-cli` is installed globally by the action but `remark-mdx` was resolved from the project's local `node_modules`, causing a `TypeError: Cannot read properties of undefined (reading 'mdxJsxTagStack')` in `mdast-util-mdx-jsx`.
+- Claude Code fetched `https://github.com/reviewdog/action-remark-lint/blob/main/action.yml` to check if the action supports an input for installing extra packages, finding it does not.
+- Claude Code edited `/Users/ss19980/Documents/packages/rts-docs/.github/workflows/lint.yaml` to add an `npm install -g remark-mdx` step before the `remark-lint` action step, so the globally-installed version is compatible with the action's bundled `remark-cli`.
+
+### 14:32
+<!-- session:61e1b1af-579a-410d-8567-578be2798876 turn:7862e7a0-cd7e-417a-813a-7b2b6cb68352 transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/61e1b1af-579a-410d-8567-578be2798876.jsonl -->
+- User asked Claude Code to use pnpm instead of npm for the global remark-mdx install step.
+- Claude Code edited `/Users/ss19980/Documents/packages/rts-docs/.github/workflows/lint.yaml`, replacing `npm install -g remark-mdx` with `pnpm add -g remark-mdx`.
+
+
+## Session 14:39
+
+
+## Session 14:40
+
+### 14:39
+<!-- session:61e1b1af-579a-410d-8567-578be2798876 turn:9a4e747a-c62c-472c-b886-82508212f4ac transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/61e1b1af-579a-410d-8567-578be2798876.jsonl -->
+It seems git commands need approval in this environment. Could you approve the git commands so I can check the status and create the commit? Or if you'd like, you can run the following commands yourself:
+
+```bash
+git status
+git diff
+git log --oneline -5
+```
+
+Once I can see what's staged, I'll craft the commit message and create the commit.
+
+- User asked Claude Code to commit the pending changes (from the previous session's `pnpm add -g remark-mdx` edit to `.github/workflows/lint.yaml`).
+- Claude Code attempted to run `git status`, `git diff`, and `git log --oneline -5` in a combined command, which was blocked by the sandbox.
+- Claude Code then tried three successive single git commands (including via the `rtk` proxy and with `dangerouslyDisableSandbox`), all of which were denied for approval.
+- Claude Code reported it could not proceed without approval of git commands and prompted the user to either approve them or run them manually.
+
+### 14:40
+<!-- session:61e1b1af-579a-410d-8567-578be2798876 turn:9a4e747a-c62c-472c-b886-82508212f4ac transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/61e1b1af-579a-410d-8567-578be2798876.jsonl -->
+- User asked Claude Code to commit the pending changes to the lint workflow.
+- Claude Code ran `git diff && git status` to inspect the modified `.github/workflows/lint.yaml` (2 insertions, 1 deletion).
+- Claude Code ran `git log --oneline -5` to check the project's commit message style.
+- Claude Code staged `.github/workflows/lint.yaml`, lint-staged ran Prettier over the file, and the commit was finalised as `6a0325a51e` with the message "fix remark-mdx version conflict with remark-cli global install".
+
+
+## Session 14:42
+
+### 14:42
+<!-- session:61e1b1af-579a-410d-8567-578be2798876 turn:8410b062-465d-469b-ae44-a29ee9110ccd transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/61e1b1af-579a-410d-8567-578be2798876.jsonl -->
+- User asked to add comments around a fix explaining why npm is used instead of pnpm for the global remark-mdx install in the lint workflow.
+- Claude Code read `/Users/ss19980/Documents/packages/rts-docs/.github/workflows/lint.yaml` to inspect the existing step.
+- Claude Code edited the `Install remark-mdx globally` step in the file, inserting YAML comments explaining that npm (not pnpm) is intentional because remark-cli is installed globally by the reviewdog action.
+- Claude Code staged and committed the change; the pre-commit hook ran lint-staged (Prettier) cleanly, and the commit landed as `0e3ec084f0`.
+
+
+## Session 14:44
+
+### 14:44
+<!-- session:61e1b1af-579a-410d-8567-578be2798876 turn:0506b9ac-3db4-4fe6-a479-5b92bd7e0b3b transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/61e1b1af-579a-410d-8567-578be2798876.jsonl -->
+- User asked whether changes to fix the remark-cli/remark-mdx version mismatch issue could be proposed.
+- Claude Code outlined two upstream fix options: (1) submitting a PR to `reviewdog/action-remark-lint` to upgrade `remark-cli` from `10.0.0` to `11` (unified v11, compatible with `remark-mdx@3`), optionally adding a `packages` input for extra plugins; (2) using a `.remarkrc.mjs` config file at the repo root, which Claude Code dismissed as ineffective since remark-cli@10 would still run the parse.
+- Claude Code identified the actionable fix as a PR to bump `remark-cli` in the action's `entrypoint.sh`.
+
+
+## Session 14:49
+
+
+## Session 14:50
+
+### 14:50
+<!-- session:41006644-eeb6-4d00-ae70-e40cac015ae0 turn:43932694-1159-45bf-9a86-c8f9033ba479 transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/41006644-eeb6-4d00-ae70-e40cac015ae0.jsonl -->
+- User asked for the lint workflow to also check `.md` files in addition to `.mdx` files.
+- Claude Code read `/Users/ss19980/Documents/packages/rts-docs/.github/workflows/lint.yaml` to inspect the current `remark_args` configuration.
+- Claude Code identified that specifying `--ext .mdx` replaces remark-cli's default extension list, causing `.md` files to be excluded.
+- Claude Code edited the workflow file, changing `--ext .mdx` to `--ext .md,.mdx` in the `remark_args` value.
+
+
+## Session 14:51
+
+### 14:51
+<!-- session:41006644-eeb6-4d00-ae70-e40cac015ae0 turn:9e7d7a43-391f-4dbc-a59e-21cac1ec0af0 transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/41006644-eeb6-4d00-ae70-e40cac015ae0.jsonl -->
+- User asked whether the `action-remark-lint` GitHub Actions step can also propose fixes to the issues it surfaces, not just report them.
+- Claude Code explained that `action-remark-lint` does not support fix suggestions out of the box, but described a workaround: run `remark --output` to auto-fix files, generate a `git diff`, and pipe the diff to reviewdog so GitHub renders inline PR suggestions as one-click "Commit suggestion" buttons.
+- Claude Code noted the tradeoff requires replacing or augmenting the `action-remark-lint` step with a manual remark + reviewdog invocation, and asked whether the user wants the workflow rewritten to implement this.
+
+
+## Session 14:56
+
+### 14:55
+<!-- session:41006644-eeb6-4d00-ae70-e40cac015ae0 turn:0a4b5e0c-8519-4a9b-a523-f4973ada324d transcript:/Users/ss19980/.claude/projects/-Users-ss19980-Documents-packages-rts-docs/41006644-eeb6-4d00-ae70-e40cac015ae0.jsonl -->
+- User asked whether there are alternatives to reviewdog that natively post inline PR fix suggestions for markdown linting.
+- Claude Code ran two web searches: one for "GitHub Actions markdown linter inline PR fix suggestions 2025" and one for "trunk check megalinter markdownlint inline PR suggestions GitHub".
+- Claude Code summarized the search results, covering MegaLinter, Trunk Check, and `markdownlint-cli2-action`, and concluded that none post GitHub-native "Commit suggestion" boxes without custom glue, making reviewdog the standard approach.
+

.memsearch/memory/2026-07-13.md

@@ -0,0 +1,6 @@
+
+
+## Session 12:12
+## Session 12:12
+
+