[SQL] General BIDS dataset and file tables - #11169
Open
MaximeBICMTL wants to merge 2 commits into
Open
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
This PR adds the "BIDS storage tables"
bids_datasetandbids_file, as well as related foreign key fields to the LORIS SQL schema.The design of these tables follows from conversations held during various imaging meetings, with only the immediately needed parts included in this PR, and leaves out the future "good to have" but less trivial parts for later (the design here is nonetheless easily extensible).
The goals of these tables is as follows:
The design of these tables is as follows:
bids_dataset: A BIDS dataset in LORIS, which may be imported using the BIDS importer or generated using the LORIS DICOM or MINC to BIDS converter.bids_file: A BIDS file in a LORIS BIDS dataset, no matter its type.This PR goes hand-to-hand with aces/Loris-MRI#1443, which populates the new general BIDS tables for the BIDS MRI and EEG importer.
This design can later be extended with other features such as the following, which are however outside of the scope of this PR: