Skip to content

Pull requests: scverse/squidpy

New pull request New
33 Open 515 Closed
33 Open 515 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Convert remaining generics to PEP 695 syntax
#1222 opened Jun 19, 2026 by timtreis Member Loading…
Require Python >=3.12, test up to 3.14
#1221 opened Jun 19, 2026 by timtreis Member Loading…
1
use numba progress in threadpool
#1220 opened Jun 19, 2026 by selmanozleyen Member Loading…
3
test: replace deprecated spatial_neighbors with mode-specific functions
#1219 opened Jun 19, 2026 by selmanozleyen Member Loading…
1
[3/3] cp_measure features + coordinate alignment for calculate_image_features
#1216 opened Jun 15, 2026 by timtreis Member Loading…
1
refactor(datasets): use the shared scverse-misc dataset registry + downloader
#1213 opened Jun 15, 2026 by timtreis Member • Draft
feat: finalize cells SpatialData dataset wiring
#1212 opened Jun 15, 2026 by timtreis Member Loading…
1
Multi-slide pooled fit_stain_reference
#1209 opened Jun 14, 2026 by timtreis Member Loading…
1
[3/3] Add make_stitched_labels (materialise stitched labels)
#1207 opened Jun 14, 2026 by timtreis Member Loading…
1
feat: stalign with a fit apply pattern. Also foundation for imputation
#1195 opened Jun 1, 2026 by selmanozleyen Member Loading…
7
Add spatialdata-plot delegation backend (gated by feature flag)
#1173 opened May 12, 2026 by timtreis Member • Draft
1
Add tile-cut stitching follow-up to calculate_tiling_qc
#1170 opened May 8, 2026 by timtreis Member Loading…
3
Draft: add contour-based ring density and smooth signed-distance density for SpatialData
#1163 opened Apr 16, 2026 by hutaobo • Draft
1
4
General purpose sq.tl.align() function with STAlign core logic
#1162 opened Apr 16, 2026 by timtreis Member Loading…
3
Feat/gene imputation
#1161 opened Apr 16, 2026 by MDLDan Contributor • Draft
2
Add pluggable backend dispatch system
#1151 opened Apr 7, 2026 by Intron7 Member • Draft
16
chore: ligrec add explicit reproducibility tests
#1132 opened Mar 2, 2026 by selmanozleyen Member Loading…
9
feat: remove ligrec parallelize
#1125 opened Feb 23, 2026 by selmanozleyen Member Loading…
@selmanozleyen
25
Improved sliding windows
#1116 opened Feb 10, 2026 by schrf Loading…
1
12
Experimental Feature: Function delegation to rapids_singlecell when gpu is available
#1093 opened Jan 14, 2026 by selmanozleyen Member • Draft
@selmanozleyen
22
Add new spatial graph features and tests (closes #901)
#1091 opened Jan 3, 2026 by luckyy14 Loading…
1
Update template to v0.7.0
#1090 opened Dec 24, 2025 by scverse-bot Contributor Loading…
1
Add Pytest Benchmarks Feature pytest-benchmark
#1070 opened Dec 1, 2025 by selmanozleyen Member • Draft
1
update var by dist normalization
#1065 opened Nov 20, 2025 by LLehner Member Loading…
5
Use the correct image for scatter plots with alternate spatial bases
#1032 opened Sep 8, 2025 by obriencshl Loading…
5
ProTip! Find all pull requests that aren't related to any open issues with -linked:issue.